This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4rx6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:58, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4rx6 is ON HOLD until Paper Publication
+
==Structure of B. subtilis GlnK-ATP complex to 2.6 Angstrom==
 +
<StructureSection load='4rx6' size='340' side='right'caption='[[4rx6]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4rx6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RX6 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5994&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rx6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rx6 OCA], [https://pdbe.org/4rx6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rx6 RCSB], [https://www.ebi.ac.uk/pdbsum/4rx6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rx6 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NRGB_BACSU NRGB_BACSU] Required for full induction of the nrgAB operon under conditions of ammonium limitation.<ref>PMID:14600241</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
All cells must sense and adapt to changing nutrient availability. However, detailed molecular mechanisms coordinating such regulatory pathways remain poorly understood. In Bacillus subtilis, nitrogen homeostasis is controlled by a unique circuitry composed of the regulator TnrA, which is deactivated by feedback-inhibited glutamine synthetase (GS) during nitrogen excess and stabilized by GlnK upon nitrogen depletion, and the repressor GlnR. Here we describe a complete molecular dissection of this network. TnrA and GlnR, the global nitrogen homeostatic transcription regulators, are revealed as founders of a new structural family of dimeric DNA-binding proteins with C-terminal, flexible, effector-binding sensors that modulate their dimerization. Remarkably, the TnrA sensor domains insert into GS intersubunit catalytic pores, destabilizing the TnrA dimer and causing an unprecedented GS dodecamer-to-tetradecamer conversion, which concomitantly deactivates GS. In contrast, each subunit of the GlnK trimer "templates" active TnrA dimers. Unlike TnrA, GlnR sensors mediate an autoinhibitory dimer-destabilizing interaction alleviated by GS, which acts as a GlnR chaperone. Thus, these studies unveil heretofore unseen mechanisms by which inducible sensor domains drive metabolic reprograming in the model Gram-positive bacterium B. subtilis.
-
Authors: Schumacher, M.A., Cuthbert, B., Tonthat, N., Chinnam, N.G., Whitfill, T.
+
Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis.,Schumacher MA, Chinnam NB, Cuthbert B, Tonthat NK, Whitfill T Genes Dev. 2015 Feb 15;29(4):451-64. doi: 10.1101/gad.254714.114. PMID:25691471<ref>PMID:25691471</ref>
-
Description: Structure of B. subtilis GlnK-ATP complex to 2.6 Angstrom
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Whitfill, T]]
+
<div class="pdbe-citations 4rx6" style="background-color:#fffaf0;"></div>
-
[[Category: Chinnam, N.G]]
+
== References ==
-
[[Category: Cuthbert, B]]
+
<references/>
-
[[Category: Tonthat, N]]
+
__TOC__
-
[[Category: Schumacher, M.A]]
+
</StructureSection>
 +
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
 +
[[Category: Large Structures]]
 +
[[Category: Chinnam NG]]
 +
[[Category: Cuthbert B]]
 +
[[Category: Schumacher MA]]
 +
[[Category: Tonthat N]]
 +
[[Category: Whitfill T]]

Current revision

Structure of B. subtilis GlnK-ATP complex to 2.6 Angstrom

PDB ID 4rx6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools