5ehu
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5ehu is ON HOLD until Paper Publication Authors: Tookmanian, E.M., Phillips-Piro, C.M., Fenlon, E.E., Brewer, S.B. Description: sfGFP mutant with u...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==sfGFP mutant with unnatural amino acid 4-azidoethoxy-L-phenylalanine incorporated at the 149 site== | |
| + | <StructureSection load='5ehu' size='340' side='right'caption='[[5ehu]], [[Resolution|resolution]] 1.45Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5ehu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EHU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EHU FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4LZ:O-[2-(TRIAZA-1,2-DIEN-2-IUM-1-YL)ETHYL]-L-TYROSINE'>4LZ</scene>, <scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ehu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ehu OCA], [https://pdbe.org/5ehu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ehu RCSB], [https://www.ebi.ac.uk/pdbsum/5ehu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ehu ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | An unnatural amino acid, 4-(2-azidoethoxy)-L-phenylalanine (AePhe, 1), was designed and synthesized in three steps from known compounds in 54 % overall yield. The sensitivity of the IR absorption of the azide of AePhe was established by comparison of the frequency of the azide asymmetric stretch vibration in water and dimethyl sulfoxide. AePhe was successfully incorporated into superfolder green fluorescent protein (sfGFP) at the 133 and 149 sites by using the amber codon suppression method. The IR spectra of these sfGFP constructs indicated that the azide group at the 149 site was not fully solvated despite the location in sfGFP and the three-atom linker between the azido group and the aromatic ring of AePhe. An X-ray crystal structure of sfGFP-149-AePhe was solved at 1.45 A resolution and provides an explanation for the IR data as the flexible linker adopts a conformation which partially buries the azide on the protein surface. Both sfGFP-AePhe constructs efficiently undergo a bioorthogonal strain-promoted click cycloaddition with a dibenzocyclooctyne derivative. | ||
| - | + | Azidoethoxyphenylalanine as a Vibrational Reporter and Click Chemistry Partner in Proteins.,Tookmanian EM, Phillips-Piro CM, Fenlon EE, Brewer SH Chemistry. 2015 Nov 26. doi: 10.1002/chem.201503908. PMID:26608683<ref>PMID:26608683</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5ehu" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | |
| - | [[Category: Fenlon | + | ==See Also== |
| - | [[Category: | + | *[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]] |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Aequorea victoria]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Brewer SB]] | ||
| + | [[Category: Fenlon EE]] | ||
| + | [[Category: Phillips-Piro CM]] | ||
| + | [[Category: Tookmanian EM]] | ||
Current revision
sfGFP mutant with unnatural amino acid 4-azidoethoxy-L-phenylalanine incorporated at the 149 site
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