5f54

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(New page: '''Unreleased structure''' The entry 5f54 is ON HOLD Authors: Hua, Y., Zhao, Y., Cheng, K. Description: Category: Unreleased Structures Category: Zhao, Y [[Category: Cheng, K]...)
Current revision (08:46, 12 July 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5f54 is ON HOLD
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==Structure of RecJ complexed with dTMP==
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<StructureSection load='5f54' size='340' side='right'caption='[[5f54]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5f54]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F54 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F54 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TMP:THYMIDINE-5-PHOSPHATE'>TMP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f54 OCA], [https://pdbe.org/5f54 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f54 RCSB], [https://www.ebi.ac.uk/pdbsum/5f54 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f54 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/D0EM60_DEIRD D0EM60_DEIRD]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The resection of DNA strand with a 5 end at double-strand breaks is an essential step in recombinational DNA repair. RecJ, a member of DHH family proteins, is the only 5 nuclease involved in the RecF recombination pathway. Here, we report the crystal structures of Deinococcus radiodurans RecJ in complex with deoxythymidine monophosphate (dTMP), ssDNA, the C-terminal region of single-stranded DNA-binding protein (SSB-Ct) and a mechanistic insight into the RecF pathway. A terminal 5 -phosphate-binding pocket above the active site determines the 5 -3 polarity of the deoxy-exonuclease of RecJ; a helical gateway at the entrance to the active site admits ssDNA only; and the continuous stacking interactions between protein and nine nucleotides ensure the processive end resection. The active site of RecJ in the N-terminal domain contains two divalent cations that coordinate the nucleophilic water. The ssDNA makes a 180 degrees turn at the scissile phosphate. The C-terminal domain of RecJ binds the SSB-Ct, which explains how RecJ and SSB work together to efficiently process broken DNA ends for homologous recombination.
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Authors: Hua, Y., Zhao, Y., Cheng, K.
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Structural basis for DNA 5 -end resection by RecJ.,Cheng K, Xu H, Chen X, Wang L, Tian B, Zhao Y, Hua Y Elife. 2016 Apr 8;5. pii: e14294. doi: 10.7554/eLife.14294. PMID:27058167<ref>PMID:27058167</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Zhao, Y]]
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<div class="pdbe-citations 5f54" style="background-color:#fffaf0;"></div>
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[[Category: Cheng, K]]
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[[Category: Hua, Y]]
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==See Also==
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*[[Exonuclease 3D structures|Exonuclease 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Deinococcus radiodurans]]
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[[Category: Large Structures]]
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[[Category: Cheng K]]
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[[Category: Hua Y]]
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[[Category: Zhao Y]]

Current revision

Structure of RecJ complexed with dTMP

PDB ID 5f54

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