1apt

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[[Image:1apt.gif|left|200px]]
 
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{{Structure
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==CRYSTALLOGRAPHIC ANALYSIS OF A PEPSTATIN ANALOGUE BINDING TO THE ASPARTYL PROTEINASE PENICILLOPEPSIN AT 1.8 ANGSTROMS RESOLUTION==
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|PDB= 1apt |SIZE=350|CAPTION= <scene name='initialview01'>1apt</scene>, resolution 1.8&Aring;
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<StructureSection load='1apt' size='340' side='right'caption='[[1apt]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=LTA:4,8-DIAMINO-3-HYDROXY-OCTANOIC+ACID+ETHYL+ESTER'>LTA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>
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<table><tr><td colspan='2'>[[1apt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Penicillium_janthinellum Penicillium janthinellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1APT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1APT FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Penicillopepsin Penicillopepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.20 3.4.23.20] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=LTA:4,8-DIAMINO-3-HYDROXY-OCTANOIC+ACID+ETHYL+ESTER'>LTA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1apt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1apt OCA], [https://pdbe.org/1apt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1apt RCSB], [https://www.ebi.ac.uk/pdbsum/1apt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1apt ProSAT]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1apt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1apt OCA], [http://www.ebi.ac.uk/pdbsum/1apt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1apt RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/PEPA1_PENJA PEPA1_PENJA] Secreted aspartic endopeptidase that allows assimilation of proteinaceous substrates. The scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in the active site. Shows a broad primary substrate specificity. Favors hydrophobic residues at the P1 and P1' positions, but can also activate trypsinogen and hydrolyze the B chain of insulin between positions 'Gly-20' and 'Glu-21'.<ref>PMID:4946839</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/1apt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1apt ConSurf].
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<div style="clear:both"></div>
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'''CRYSTALLOGRAPHIC ANALYSIS OF A PEPSTATIN ANALOGUE BINDING TO THE ASPARTYL PROTEINASE PENICILLOPEPSIN AT 1.8 ANGSTROMS RESOLUTION'''
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==See Also==
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*[[Penicillopepsin|Penicillopepsin]]
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*[[Pepsin|Pepsin]]
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==About this Structure==
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== References ==
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1APT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1APT OCA].
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<references/>
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[[Category: Penicillopepsin]]
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__TOC__
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[[Category: Single protein]]
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</StructureSection>
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[[Category: James, M N.G.]]
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[[Category: Large Structures]]
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[[Category: Sielecki, A R.]]
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[[Category: Penicillium janthinellum]]
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[[Category: hydrolase(acid proteinase)]]
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[[Category: James MNG]]
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[[Category: Sielecki AR]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:45:07 2008''
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Current revision

CRYSTALLOGRAPHIC ANALYSIS OF A PEPSTATIN ANALOGUE BINDING TO THE ASPARTYL PROTEINASE PENICILLOPEPSIN AT 1.8 ANGSTROMS RESOLUTION

PDB ID 1apt

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