5a24
From Proteopedia
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==Crystal structure of Dionain-1, the major endopeptidase in the Venus flytrap digestive juice== | ==Crystal structure of Dionain-1, the major endopeptidase in the Venus flytrap digestive juice== | ||
- | <StructureSection load='5a24' size='340' side='right' caption='[[5a24]], [[Resolution|resolution]] 1.50Å' scene=''> | + | <StructureSection load='5a24' size='340' side='right'caption='[[5a24]], [[Resolution|resolution]] 1.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5a24]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A24 OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5a24]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dionaea_muscipula Dionaea muscipula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A24 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A24 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a24 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a24 OCA], [https://pdbe.org/5a24 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a24 RCSB], [https://www.ebi.ac.uk/pdbsum/5a24 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a24 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A0E3GLN3_DIOMU A0A0E3GLN3_DIOMU] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Carnivorous plants primarily use aspartic proteases during digestion of captured prey. In contrast, the major endopeptidases in the digestive fluid of the Venus flytrap (Dionaea muscipula) are cysteine proteases (dionain-1 to -4). Here, we present the crystal structure of mature dionain-1 in covalent complex with inhibitor E-64 at 1.5 A resolution. The enzyme exhibits an overall protein fold reminiscent of other plant cysteine proteases. The inactive glycosylated pro-form undergoes autoprocessing and self-activation, optimally at the physiologically relevant pH value of 3.6, at which the protective effect of the pro-domain is lost. The mature enzyme was able to efficiently degrade a Drosophila fly protein extract at pH 4 showing high activity against the abundant Lys- and Arg-rich protein, myosin. The substrate specificity of dionain-1 was largely similar to that of papain with preference for hydrophobic and aliphatic residues in subsite S2 and for positively charged residues in S1. A tentative structure of the pro-domain was obtained by homology modeling and suggested that a pro-peptide Lys residue intrudes the S2 pocket which is more spacious than in papain. This study provides the first analysis of a cysteine protease from the digestive fluid of a carnivorous plant and confirms the close relationship between carnivorous action and plant defense mechanisms. | ||
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+ | Enzymatic and structural characterization of the major endopeptidase in the Venus flytrap digestion fluid.,Risor MW, Thomsen LR, Sanggaard KW, Nielsen TA, Thogersen IB, Lukassen MV, Rossen L, Garcia-Ferrer I, Guevara T, Scavenius C, Meinjohanns E, Gomis-Ruth FX, Enghild JJ J Biol Chem. 2015 Dec 1. pii: jbc.M115.672550. PMID:26627834<ref>PMID:26627834</ref> | ||
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+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5a24" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Enghild | + | [[Category: Dionaea muscipula]] |
- | [[Category: Garcia-Ferrer | + | [[Category: Large Structures]] |
- | [[Category: Gomis-Ruth | + | [[Category: Enghild JJ]] |
- | [[Category: Guevara | + | [[Category: Garcia-Ferrer I]] |
- | [[Category: Lukassen | + | [[Category: Gomis-Ruth FX]] |
- | [[Category: Meinjohanns | + | [[Category: Guevara T]] |
- | [[Category: Nielsen | + | [[Category: Lukassen MV]] |
- | [[Category: Nielsen | + | [[Category: Meinjohanns E]] |
- | [[Category: Risor | + | [[Category: Nielsen NC]] |
- | [[Category: Rossen | + | [[Category: Nielsen TA]] |
- | [[Category: Sanggaard | + | [[Category: Risor MW]] |
- | [[Category: Thogersen | + | [[Category: Rossen L]] |
- | [[Category: Thomsen | + | [[Category: Sanggaard KW]] |
- | + | [[Category: Thogersen IB]] | |
- | + | [[Category: Thomsen LR]] | |
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Current revision
Crystal structure of Dionain-1, the major endopeptidase in the Venus flytrap digestive juice
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