5ap9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:14, 10 January 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5ap9 is ON HOLD until Paper Publication
+
==Controlled lid-opening in Thermomyces lanuginosus lipase - a switch for activity and binding==
 +
<StructureSection load='5ap9' size='340' side='right'caption='[[5ap9]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5ap9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermomyces_lanuginosus Thermomyces lanuginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AP9 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ap9 OCA], [https://pdbe.org/5ap9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ap9 RCSB], [https://www.ebi.ac.uk/pdbsum/5ap9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ap9 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LIP_THELA LIP_THELA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Here, we present a lipase mutant containing a biochemical switch allowing a controlled opening and closing of the lid independent of the environment. The closed form of the TlL mutant shows low binding to hydrophobic surfaces compared to the binding observed after activating the controlled switch inducing lid-opening. We directly show that lipid binding of this mutant is connected to an open lid conformation demonstrating the impact of the exposed amino acid residues and their participation in binding at the water-lipid interface. The switch was created by introducing two cysteine residues into the protein backbone at sites 86 and 255. The crystal structure of the mutant shows the successful formation of a disulfide bond between C86 and C255 which causes strained closure of the lid-domain. Control of enzymatic activity and binding was demonstrated on substrate emulsions and natural lipid layers. The locked form displayed low enzymatic activity (~10%) compared to wild-type. Upon release of the lock, enzymatic activity was fully restored. Only 10% binding to natural lipid substrates was observed for the locked lipase compared to wild-type, but binding was restored upon adding reducing agent. QCM-D measurements revealed a seven-fold increase in binding rate for the unlocked lipase. The TlL_locked mutant shows structural changes across the protein important for understanding the mechanism of lid-opening and closing. Our experimental results reveal sites of interest for future mutagenesis studies aimed at altering the activation mechanism of TlL and create perspectives for generating tunable lipases that activate under controlled conditions.
-
Authors: Skold-Jorgensen, J., Vind, J., Moroz, O.V., Blagova, E.V., Bhatia, V.K., Svendsen, A., Wilson, K.S., Bjerrum, M.J.
+
Controlled lid-opening in Thermomyces lanuginosus lipase- An engineered switch for studying lipase function.,Skjold-Jorgensen J, Vind J, Moroz OV, Blagova E, Bhatia VK, Svendsen A, Wilson KS, Bjerrum MJ Biochim Biophys Acta. 2017 Jan;1865(1):20-27. doi: 10.1016/j.bbapap.2016.09.016. , Epub 2016 Sep 28. PMID:27693248<ref>PMID:27693248</ref>
-
Description: Controlled lid-opening in Thermomyces lanuginosus lipase -a switch for activity and binding
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Wilson, K.S]]
+
<div class="pdbe-citations 5ap9" style="background-color:#fffaf0;"></div>
-
[[Category: Svendsen, A]]
+
 
-
[[Category: Bjerrum, M.J]]
+
==See Also==
-
[[Category: Blagova, E.V]]
+
*[[Lipase 3D Structures|Lipase 3D Structures]]
-
[[Category: Vind, J]]
+
== References ==
-
[[Category: Moroz, O.V]]
+
<references/>
-
[[Category: Bhatia, V.K]]
+
__TOC__
-
[[Category: Skold-Jorgensen, J]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermomyces lanuginosus]]
 +
[[Category: Bhatia VK]]
 +
[[Category: Bjerrum MJ]]
 +
[[Category: Blagova EV]]
 +
[[Category: Moroz OV]]
 +
[[Category: Skjold-Joergensen J]]
 +
[[Category: Svendsen A]]
 +
[[Category: Vind J]]
 +
[[Category: Wilson KS]]

Current revision

Controlled lid-opening in Thermomyces lanuginosus lipase - a switch for activity and binding

PDB ID 5ap9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools