5cdm
From Proteopedia
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==2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA== | ==2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA== | ||
- | <StructureSection load='5cdm' size='340' side='right' caption='[[5cdm]], [[Resolution|resolution]] 2.50Å' scene=''> | + | <StructureSection load='5cdm' size='340' side='right'caption='[[5cdm]], [[Resolution|resolution]] 2.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5cdm]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CDM OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5cdm]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CDM FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=54Q:(2R,4S,4AS)-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5-PYRIMIDINE]-2,4,6(1H,3H)-TRIONE'>54Q</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=54Q:(2R,4S,4AS)-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5-PYRIMIDINE]-2,4,6(1H,3H)-TRIONE'>54Q</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cdm OCA], [https://pdbe.org/5cdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cdm RCSB], [https://www.ebi.ac.uk/pdbsum/5cdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cdm ProSAT]</span></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/GYRB_STAAN GYRB_STAAN] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity). |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</div> | </div> | ||
<div class="pdbe-citations 5cdm" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5cdm" style="background-color:#fffaf0;"></div> | ||
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+ | ==See Also== | ||
+ | *[[Gyrase 3D Structures|Gyrase 3D Structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Staphylococcus aureus]] |
- | [[Category: | + | [[Category: Synthetic construct]] |
- | [[Category: | + | [[Category: Bax BD]] |
- | [[Category: | + | [[Category: Chan PF]] |
- | [[Category: | + | [[Category: Srikannathasan V]] |
- | + |
Current revision
2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA
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