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| | ==Crystal structure of de novo designed helical repeat protein DHR18== | | ==Crystal structure of de novo designed helical repeat protein DHR18== |
| - | <StructureSection load='5cwi' size='340' side='right' caption='[[5cwi]], [[Resolution|resolution]] 1.75Å' scene=''> | + | <StructureSection load='5cwi' size='340' side='right'caption='[[5cwi]], [[Resolution|resolution]] 1.75Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5cwi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CWI FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5cwi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CWI FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cwb|5cwb]], [[5cwc|5cwc]], [[5cwd|5cwd]], [[5cwf|5cwf]], [[5cwg|5cwg]], [[5cwh|5cwh]], [[5cwj|5cwj]], [[5cwk|5cwk]], [[5cwl|5cwl]], [[5cwm|5cwm]], [[5cwn|5cwn]], [[5cwo|5cwo]], [[5cwp|5cwp]], [[5cwq|5cwq]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cwi OCA], [http://pdbe.org/5cwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cwi RCSB], [http://www.ebi.ac.uk/pdbsum/5cwi PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cwi OCA], [https://pdbe.org/5cwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cwi RCSB], [https://www.ebi.ac.uk/pdbsum/5cwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cwi ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bhabha, G]] | + | [[Category: Large Structures]] |
| - | [[Category: Ekiert, D C]] | + | [[Category: Synthetic construct]] |
| - | [[Category: De novo protein]] | + | [[Category: Bhabha G]] |
| - | [[Category: Helical repeat protein]] | + | [[Category: Ekiert DC]] |
| Structural highlights
Publication Abstract from PubMed
A central question in protein evolution is the extent to which naturally occurring proteins sample the space of folded structures accessible to the polypeptide chain. Repeat proteins composed of multiple tandem copies of a modular structure unit are widespread in nature and have critical roles in molecular recognition, signalling, and other essential biological processes. Naturally occurring repeat proteins have been re-engineered for molecular recognition and modular scaffolding applications. Here we use computational protein design to investigate the space of folded structures that can be generated by tandem repeating a simple helix-loop-helix-loop structural motif. Eighty-three designs with sequences unrelated to known repeat proteins were experimentally characterized. Of these, 53 are monomeric and stable at 95 degrees C, and 43 have solution X-ray scattering spectra consistent with the design models. Crystal structures of 15 designs spanning a broad range of curvatures are in close agreement with the design models with root mean square deviations ranging from 0.7 to 2.5 A. Our results show that existing repeat proteins occupy only a small fraction of the possible repeat protein sequence and structure space and that it is possible to design novel repeat proteins with precisely specified geometries, opening up a wide array of new possibilities for biomolecular engineering.
Exploring the repeat protein universe through computational protein design.,Brunette TJ, Parmeggiani F, Huang PS, Bhabha G, Ekiert DC, Tsutakawa SE, Hura GL, Tainer JA, Baker D Nature. 2015 Dec 24;528(7583):580-4. doi: 10.1038/nature16162. Epub 2015 Dec 16. PMID:26675729[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Brunette TJ, Parmeggiani F, Huang PS, Bhabha G, Ekiert DC, Tsutakawa SE, Hura GL, Tainer JA, Baker D. Exploring the repeat protein universe through computational protein design. Nature. 2015 Dec 24;528(7583):580-4. doi: 10.1038/nature16162. Epub 2015 Dec 16. PMID:26675729 doi:http://dx.doi.org/10.1038/nature16162
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