5fft

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(New page: '''Unreleased structure''' The entry 5fft is ON HOLD Authors: Goh, B.C., Wu, H., Rynkiewicz, M.J., Schulten, K., Seaton, B.A., McCormack, F.X. Description: Crystal Structure of Surfact...)
Current revision (06:49, 19 July 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5fft is ON HOLD
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==Crystal Structure of Surfactant Protein-A Y221A Mutant==
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<StructureSection load='5fft' size='340' side='right'caption='[[5fft]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5fft]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FFT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SME:METHIONINE+SULFOXIDE'>SME</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fft FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fft OCA], [https://pdbe.org/5fft PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fft RCSB], [https://www.ebi.ac.uk/pdbsum/5fft PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fft ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SFTPA_RAT SFTPA_RAT] In presence of calcium ions, it binds to surfactant phospholipids and contributes to lower the surface tension at the air-liquid interface in the alveoli of the mammalian lung and is essential for normal respiration.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Surfactant protein A (SP-A) is a collagenous C-type lectin (collectin) that is critical for pulmonary defense against inhaled microorganisms. Bifunctional avidity of SP-A for pathogen-associated molecular patterns (PAMPs) such as lipid A and for dipalmitoylphosphatidylcholine (DPPC), the major component of surfactant membranes lining the air-liquid interface of the lung, ensures that the protein is poised for first-line interactions with inhaled pathogens. To improve our understanding of the motifs that are required for interactions with microbes and surfactant structures, we explored the role of the tyrosine-rich binding surface on the carbohydrate recognition domain of SP-A in the interaction with DPPC and lipid A using crystallography, site-directed mutagenesis, and molecular dynamics simulations. Critical binding features for DPPC binding include a three-walled tyrosine cage that binds the choline headgroup through cation-pi interactions and a positively charged cluster that binds the phosphoryl group. This basic cluster is also critical for binding of lipid A, a bacterial PAMP and target for SP-A. Molecular dynamics simulations further predict that SP-A binds lipid A more tightly than DPPC. These results suggest that the differential binding properties of SP-A favor transfer of the protein from surfactant DPPC to pathogen membranes containing appropriate lipid PAMPs to effect key host defense functions.
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Authors: Goh, B.C., Wu, H., Rynkiewicz, M.J., Schulten, K., Seaton, B.A., McCormack, F.X.
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Elucidation of Lipid Binding Sites on Lung Surfactant Protein A Using X-ray Crystallography, Mutagenesis, and Molecular Dynamics Simulations.,Goh BC, Wu H, Rynkiewicz MJ, Schulten K, Seaton BA, McCormack FX Biochemistry. 2016 Jul 5;55(26):3692-701. doi: 10.1021/acs.biochem.6b00048. Epub , 2016 Jun 21. PMID:27324153<ref>PMID:27324153</ref>
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Description: Crystal Structure of Surfactant Protein-A Y221A Mutant
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Mccormack, F.X]]
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<div class="pdbe-citations 5fft" style="background-color:#fffaf0;"></div>
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[[Category: Wu, H]]
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== References ==
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[[Category: Rynkiewicz, M.J]]
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<references/>
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[[Category: Seaton, B.A]]
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__TOC__
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[[Category: Goh, B.C]]
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</StructureSection>
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[[Category: Schulten, K]]
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Goh BC]]
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[[Category: McCormack FX]]
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[[Category: Rynkiewicz MJ]]
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[[Category: Schulten K]]
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[[Category: Seaton BA]]
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[[Category: Wu H]]

Current revision

Crystal Structure of Surfactant Protein-A Y221A Mutant

PDB ID 5fft

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