5fqu

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'''Unreleased structure'''
 
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The entry 5fqu is ON HOLD until Paper Publication
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==Orthorhombic crystal structure of of PlpD (selenomethionine derivative)==
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<StructureSection load='5fqu' size='340' side='right'caption='[[5fqu]], [[Resolution|resolution]] 2.74&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5fqu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FQU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FQU FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.74&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fqu OCA], [https://pdbe.org/5fqu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fqu RCSB], [https://www.ebi.ac.uk/pdbsum/5fqu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fqu ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9HYQ6_PSEAE Q9HYQ6_PSEAE]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The type V secretion system is a macromolecular machine employed by a number of bacteria to secrete virulence factors into the environment. The human pathogen Pseudomonas aeruginosa employs the newly described type Vd secretion system to secrete a soluble variant of PlpD, a lipase of the patatin-like family synthesized as a single macromolecule that also carries a polypeptide transport-associated domain and a 16-stranded beta-barrel. Here we report the crystal structure of the secreted form of PlpD in its biologically active state. PlpD displays a classical lipase alpha/beta hydrolase fold with a catalytic site located within a highly hydrophobic channel that entraps a lipidic molecule. The active site is covered by a flexible lid, as in other lipases, indicating that this region in PlpD must modify its conformation in order for catalysis at the water-lipid interface to occur. PlpD displays phospholipase A1 activity and is able to recognize a number of phosphatidylinositols and other phosphatidyl analogs. PlpD is the first example of an active phospholipase secreted through the type V secretion system, for which there are more than 200 homologs, revealing details of the lipid destruction arsenal expressed by P. aeruginosa in order to establish infection.
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Authors: Vinicius da Mata Madeira, P., Zouhir, S., Basso, P., Neves, D., Laubier, A., Salacha, R., Bleves, S., Faudry, E., Contreras-Martel, C., Dessen, A.
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Structural Basis of Lipid Targeting and Destruction by the Type V Secretion System of Pseudomonas aeruginosa.,da Mata Madeira PV, Zouhir S, Basso P, Neves D, Laubier A, Salacha R, Bleves S, Faudry E, Contreras-Martel C, Dessen A J Mol Biol. 2016 May 8;428(9 Pt A):1790-803. doi: 10.1016/j.jmb.2016.03.012. Epub, 2016 Mar 21. PMID:27012424<ref>PMID:27012424</ref>
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Description: Orthorhombic crystal structure of of PlpD (selenomethionine derivative)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Dessen, A]]
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<div class="pdbe-citations 5fqu" style="background-color:#fffaf0;"></div>
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[[Category: Neves, D]]
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== References ==
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[[Category: Salacha, R]]
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<references/>
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[[Category: Bleves, S]]
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__TOC__
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[[Category: Contreras-Martel, C]]
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</StructureSection>
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[[Category: Vinicius Da Mata Madeira, P]]
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[[Category: Large Structures]]
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[[Category: Zouhir, S]]
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[[Category: Pseudomonas aeruginosa PAO1]]
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[[Category: Laubier, A]]
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[[Category: Basso P]]
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[[Category: Basso, P]]
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[[Category: Bleves S]]
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[[Category: Faudry, E]]
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[[Category: Contreras-Martel C]]
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[[Category: Dessen A]]
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[[Category: Faudry E]]
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[[Category: Laubier A]]
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[[Category: Neves D]]
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[[Category: Salacha R]]
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[[Category: Vinicius da Mata Madeira P]]
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[[Category: Zouhir S]]

Current revision

Orthorhombic crystal structure of of PlpD (selenomethionine derivative)

PDB ID 5fqu

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