5ha1
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of human cellular retinol binding protein 1 in complex with retinylamine== | |
+ | <StructureSection load='5ha1' size='340' side='right'caption='[[5ha1]], [[Resolution|resolution]] 1.35Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5ha1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HA1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HA1 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RNE:(2~{E},4~{E},6~{E},8~{E})-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLCYCLOHEXEN-1-YL)NONA-2,4,6,8-TETRAEN-1-AMINE'>RNE</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ha1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ha1 OCA], [https://pdbe.org/5ha1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ha1 RCSB], [https://www.ebi.ac.uk/pdbsum/5ha1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ha1 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/RET1_HUMAN RET1_HUMAN] Intracellular transport of retinol. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Important in regulating the uptake, storage, and metabolism of retinoids, cellular retinol-binding protein 1 (CRBP1) is essential for trafficking vitamin A through the cytoplasm. However, the molecular details of ligand uptake and targeted release by CRBP1 remain unclear. Here we report the first structure of CRBP1 in a ligand-free form as well as ultra-high resolution structures of this protein bound to either all-trans-retinol or retinylamine, the latter a therapeutic retinoid that prevents light-induced retinal degeneration. Superpositioning of human apo- and holo-CRBP1 revealed major differences within segments surrounding the entrance to the retinoid-binding site. These included alpha-helix II and hairpin turns between beta-strands betaC-betaD and betaE-betaF as well as several side chains, such as Phe-57, Tyr-60, and Ile-77, that change their orientations to accommodate the ligand. Additionally, we mapped hydrogen bond networks inside the retinoid-binding cavity and demonstrated their significance for the ligand affinity. Analyses of the crystallographic B-factors indicated several regions with higher backbone mobility in the apoprotein that became more rigid upon retinoid binding. This conformational flexibility of human apo-CRBP1 facilitates interaction with the ligands, whereas the more rigid holoprotein structure protects the labile retinoid moiety during vitamin A transport. These findings suggest a mechanism of induced fit upon ligand binding by mammalian cellular retinol-binding proteins. | ||
- | + | Ligand Binding Induces Conformational Changes in Human Cellular Retinol-binding Protein 1 (CRBP1) Revealed by Atomic Resolution Crystal Structures.,Silvaroli JA, Arne JM, Chelstowska S, Kiser PD, Banerjee S, Golczak M J Biol Chem. 2016 Apr 15;291(16):8528-40. doi: 10.1074/jbc.M116.714535. Epub 2016, Feb 21. PMID:26900151<ref>PMID:26900151</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Arne | + | <div class="pdbe-citations 5ha1" style="background-color:#fffaf0;"></div> |
- | [[Category: Banerjee | + | |
- | [[Category: | + | ==See Also== |
- | [[Category: Kiser | + | *[[Retinol-binding protein 3D structures|Retinol-binding protein 3D structures]] |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Arne JM]] | ||
+ | [[Category: Banerjee S]] | ||
+ | [[Category: Golczak M]] | ||
+ | [[Category: Kiser PD]] | ||
+ | [[Category: Silvaroli JA]] |
Current revision
Crystal structure of human cellular retinol binding protein 1 in complex with retinylamine
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