This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4xw0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:51, 10 January 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex==
==Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex==
-
<StructureSection load='4xw0' size='340' side='right' caption='[[4xw0]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
+
<StructureSection load='4xw0' size='340' side='right'caption='[[4xw0]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4xw0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XW0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XW0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4xw0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XW0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LCG:[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL+DIHYDROGEN+PHOSPHATE'>LCG</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LCG:[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL+DIHYDROGEN+PHOSPHATE'>LCG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xw0 OCA], [http://pdbe.org/4xw0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xw0 RCSB], [http://www.ebi.ac.uk/pdbsum/4xw0 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xw0 OCA], [https://pdbe.org/4xw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xw0 RCSB], [https://www.ebi.ac.uk/pdbsum/4xw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xw0 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 20: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Banaszak, K]]
+
[[Category: Homo sapiens]]
-
[[Category: Kiliszek, A]]
+
[[Category: Large Structures]]
-
[[Category: Rypniewski, W]]
+
[[Category: Banaszak K]]
-
[[Category: 3' overhanging nucleotide]]
+
[[Category: Kiliszek A]]
-
[[Category: Ccug repeat]]
+
[[Category: Rypniewski W]]
-
[[Category: Lna residue]]
+
-
[[Category: Myotonic dystrophy type 2]]
+
-
[[Category: Rna]]
+
-
[[Category: Rna duplex]]
+
-
[[Category: Tautomery]]
+

Current revision

Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex

PDB ID 4xw0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools