This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5hgw
From Proteopedia
(Difference between revisions)
m (Protected "5hgw" [edit=sysop:move=sysop]) |
|||
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a peptide deformylase from Burkholderia ambifaria== | |
| - | + | <StructureSection load='5hgw' size='340' side='right'caption='[[5hgw]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[5hgw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_ambifaria_MC40-6 Burkholderia ambifaria MC40-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HGW FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hgw OCA], [https://pdbe.org/5hgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hgw RCSB], [https://www.ebi.ac.uk/pdbsum/5hgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hgw ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B1YSH1_BURA4 B1YSH1_BURA4] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Burkholderia ambifaria MC40-6]] | ||
| + | [[Category: Large Structures]] | ||
Current revision
Crystal structure of a peptide deformylase from Burkholderia ambifaria
| |||||||||||
