We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1bq9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:50, 20 November 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1bq9.gif|left|200px]]
 
-
{{Structure
+
==Rubredoxin (Formyl Methionine Mutant) from Pyrococcus Furiosus==
-
|PDB= 1bq9 |SIZE=350|CAPTION= <scene name='initialview01'>1bq9</scene>, resolution 1.2&Aring;
+
<StructureSection load='1bq9' size='340' side='right'caption='[[1bq9]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>
+
<table><tr><td colspan='2'>[[1bq9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQ9 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq9 OCA], [https://pdbe.org/1bq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bq9 RCSB], [https://www.ebi.ac.uk/pdbsum/1bq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bq9 ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq9 OCA], [http://www.ebi.ac.uk/pdbsum/1bq9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1bq9 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/1bq9_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bq9 ConSurf].
 +
<div style="clear:both"></div>
-
'''RUBREDOXIN (FORMYL METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS'''
+
==See Also==
-
 
+
*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
-
 
+
*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
-
==About this Structure==
+
__TOC__
-
1BQ9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ9 OCA].
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Single protein]]
+
[[Category: Adams MWW]]
-
[[Category: Adams, M W.W.]]
+
[[Category: Bau R]]
-
[[Category: Bau, R.]]
+
[[Category: Eidsness MK]]
-
[[Category: Eidsness, M K.]]
+
[[Category: Huang H]]
-
[[Category: Huang, H.]]
+
[[Category: Kurtz DM]]
-
[[Category: Kurtz, D M.]]
+
[[Category: Rees DC]]
-
[[Category: Rees, D C.]]
+
[[Category: Scott RA]]
-
[[Category: Scott, R A.]]
+
-
[[Category: high-resolution structure]]
+
-
[[Category: iron-sulfur protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:06:02 2008''
+

Current revision

Rubredoxin (Formyl Methionine Mutant) from Pyrococcus Furiosus

PDB ID 1bq9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1bq9"
Personal tools