This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5dbg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:15, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+==
==Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+==
-
<StructureSection load='5dbg' size='340' side='right' caption='[[5dbg]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='5dbg' size='340' side='right'caption='[[5dbg]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5dbg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5dbg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Catharanthus_roseus Catharanthus roseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5dbf|5dbf]], [[5dbi|5dbi]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Iridoid_synthase Iridoid synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.99 1.3.1.99] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbg OCA], [https://pdbe.org/5dbg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbg RCSB], [https://www.ebi.ac.uk/pdbsum/5dbg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbg ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbg OCA], [http://pdbe.org/5dbg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbg RCSB], [http://www.ebi.ac.uk/pdbsum/5dbg PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/IRIS_CATRO IRIS_CATRO]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Iridoid synthase]]
+
[[Category: Catharanthus roseus]]
-
[[Category: Chen, C C]]
+
[[Category: Large Structures]]
-
[[Category: Guo, R T]]
+
[[Category: Chen CC]]
-
[[Category: Hu, Y M]]
+
[[Category: Guo RT]]
-
[[Category: Ko, T P]]
+
[[Category: Hu YM]]
-
[[Category: Liu, W D]]
+
[[Category: Ko TP]]
-
[[Category: Xu, Z X]]
+
[[Category: Liu WD]]
-
[[Category: Zheng, Y Y]]
+
[[Category: Xu ZX]]
-
[[Category: Acidocalcisomal pyrophosphatase]]
+
[[Category: Zheng YY]]
-
[[Category: Inhibitor]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Substrate binding]]
+

Current revision

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+

PDB ID 5dbg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools