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1w8r

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[[Image:1w8r.gif|left|200px]]<br />
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#REDIRECT [[2yce]] This PDB entry is obsolete and replaced by 2yce
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<applet load="1w8r" size="450" color="white" frame="true" align="right" spinBox="true"
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caption="1w8r, resolution 1.93&Aring;" />
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'''THE MECHANISM OF THE SCHIFF BASE FORMING FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE: STRUCTURAL ANALYSIS OF REACTION INTERMEDIATES'''<br />
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==Overview==
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The glycolytic enzyme fructose-1,6-bisphosphate aldolase (FBPA) catalyzes, the reversible cleavage of fructose 1,6-bisphosphate to glyceraldehyde, 3-phosphate and dihydroxyacetone phosphate. Catalysis of Schiff base, forming class I FBPA relies on a number of intermediates covalently bound, to the catalytic lysine. Using active site mutants of FBPA I from, Thermoproteus tenax, we have solved the crystal structures of the enzyme, covalently bound to the carbinolamine of the substrate fructose, 1,6-bisphosphate and noncovalently bound to the cyclic form of the, substrate. The structures, determined at a resolution of 1.9 A and refined, to crystallographic R factors of 0.148 and 0.149, respectively, represent, the first view of any FBPA I in these two stages of the reaction pathway, and allow detailed analysis of the roles of active site residues in, catalysis. The active site geometry of the Tyr146Phe FBPA variant with the, carbinolamine intermediate supports the notion that in the archaeal FBPA I, Tyr146 is the proton donor catalyzing the conversion between the, carbinolamine and Schiff base. Our structural analysis furthermore, indicates that Glu187 is the proton donor in the eukaryotic FBPA I, whereas an aspartic acid, conserved in all FBPA I enzymes, is in a perfect, position to be the general base facilitating carbon-carbon cleavage. The, crystal structure of the Trp144Glu, Tyr146Phe double-mutant substrate, complex represents the first example where the cyclic form of, beta-fructose 1,6-bisphosphate is noncovalently bound to FBPA I. The, structure thus allows for the first time the catalytic mechanism of ring, opening to be unraveled.
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==About this Structure==
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1W8R is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermoproteus_tenax Thermoproteus tenax] with F2P as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Fructose-bisphosphate_aldolase Fructose-bisphosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.13 4.1.2.13] Structure known Active Site: AC1. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1W8R OCA].
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==Reference==
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Mechanism of the Schiff base forming fructose-1,6-bisphosphate aldolase: structural analysis of reaction intermediates., Lorentzen E, Siebers B, Hensel R, Pohl E, Biochemistry. 2005 Mar 22;44(11):4222-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15766250 15766250]
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[[Category: Fructose-bisphosphate aldolase]]
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[[Category: Single protein]]
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[[Category: Thermoproteus tenax]]
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[[Category: Hensel, R.]]
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[[Category: Lorentzen, E.]]
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[[Category: Pohl, E.]]
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[[Category: Siebers, B.]]
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[[Category: F2P]]
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[[Category: 6-bisphosphate]]
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[[Category: aldolase]]
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[[Category: archaeal]]
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[[Category: catalytic mechanism]]
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[[Category: fructose 1]]
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[[Category: glycolytic]]
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[[Category: lyase]]
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[[Category: reaction intermediate]]
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[[Category: tim barrel]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 5 15:07:38 2007''
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Current revision

  1. REDIRECT 2yce This PDB entry is obsolete and replaced by 2yce

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