Sandbox Assemblies
From Proteopedia
(Difference between revisions)
(test page for loading of mmCIF assemblies) |
(test page for loading of mmCIF assemblies) |
||
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Testing mmCIF assembly files== | ==Testing mmCIF assembly files== | ||
| - | + | Index to test pages: | |
| - | + | ||
| + | <table> | ||
| + | <tr> | ||
| + | <th> </th> | ||
| + | <th>Calpha only?</th> | ||
| + | <th>nr. models</th> | ||
| + | <th>exp.technique</th> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/4mne|4mne]]</td> | ||
| + | <td><div align="center"></div></td> | ||
| + | <td><div align="center">1</div></td> | ||
| + | <td>X-ray</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/1ae4|1ae4]]</td> | ||
| + | <td><div align="center">C</div></td> | ||
| + | <td><div align="center">1</div></td> | ||
| + | <td>X-ray</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/2k8v|2k8v]]</td> | ||
| + | <td><div align="center"></div></td> | ||
| + | <td><div align="center">40</div></td> | ||
| + | <td>solution NMR</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/1m8m|1m8m]]</td> | ||
| + | <td><div align="center"></div></td> | ||
| + | <td><div align="center">12</div></td> | ||
| + | <td>solid-state NMR</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/2qfg|2qfg]]</td> | ||
| + | <td><div align="center">C</div></td> | ||
| + | <td><div align="center">12</div></td> | ||
| + | <td>X-ray solution scattering</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/2ic4|2ic4]]</td> | ||
| + | <td><div align="center">C</div></td> | ||
| + | <td><div align="center">1</div></td> | ||
| + | <td>X-ray solution scattering</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Sandbox_Assemblies/2lev|2lev]]</td> | ||
| + | <td><div align="center"></div></td> | ||
| + | <td><div align="center">20</div></td> | ||
| + | <td>hybrid, sol'n scattering + sol'n NMR</td> | ||
| + | </tr> | ||
| + | </table> | ||
| - | + | Hints: to check the proper loading of simplified vs. full model: | |
| + | * check nr. of models in menu > Model(s) | ||
| + | * if there are no ligands, menu > select > element will display either just Carbon or C,O,N... | ||
| + | * if there are ligands, open the console and try "select protein and not _C" | ||
Current revision
Testing mmCIF assembly files
Index to test pages:
| Calpha only? | nr. models | exp.technique | |
|---|---|---|---|
| 4mne | 1 |
X-ray | |
| 1ae4 | C |
1 |
X-ray |
| 2k8v | 40 |
solution NMR | |
| 1m8m | 12 |
solid-state NMR | |
| 2qfg | C |
12 |
X-ray solution scattering |
| 2ic4 | C |
1 |
X-ray solution scattering |
| 2lev | 20 |
hybrid, sol'n scattering + sol'n NMR |
Hints: to check the proper loading of simplified vs. full model:
- check nr. of models in menu > Model(s)
- if there are no ligands, menu > select > element will display either just Carbon or C,O,N...
- if there are ligands, open the console and try "select protein and not _C"
