4w8i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:27, 6 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of LpSPL/Lpp2128, Legionella pneumophila sphingosine-1 phosphate lyase==
==Crystal structure of LpSPL/Lpp2128, Legionella pneumophila sphingosine-1 phosphate lyase==
-
<StructureSection load='4w8i' size='340' side='right' caption='[[4w8i]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
+
<StructureSection load='4w8i' size='340' side='right'caption='[[4w8i]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4w8i]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4W8I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4w8i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_str._Paris Legionella pneumophila str. Paris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W8I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4W8I FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sphinganine-1-phosphate_aldolase Sphinganine-1-phosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.27 4.1.2.27] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w8i OCA], [http://pdbe.org/4w8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4w8i RCSB], [http://www.ebi.ac.uk/pdbsum/4w8i PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4w8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w8i OCA], [https://pdbe.org/4w8i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4w8i RCSB], [https://www.ebi.ac.uk/pdbsum/4w8i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4w8i ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SGPL_LEGPA SGPL_LEGPA]] Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Possibly implicated in influencing the macrophage autophagy pathway.
+
[https://www.uniprot.org/uniprot/SGPL_LEGPA SGPL_LEGPA] Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Possibly implicated in influencing the macrophage autophagy pathway.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Autophagy is an essential component of innate immunity, enabling the detection and elimination of intracellular pathogens. Legionella pneumophila, an intracellular pathogen that can cause a severe pneumonia in humans, is able to modulate autophagy through the action of effector proteins that are translocated into the host cell by the pathogen's Dot/Icm type IV secretion system. Many of these effectors share structural and sequence similarity with eukaryotic proteins. Indeed, phylogenetic analyses have indicated their acquisition by horizontal gene transfer from a eukaryotic host. Here we report that L. pneumophila translocates the effector protein sphingosine-1 phosphate lyase (LpSpl) to target the host sphingosine biosynthesis and to curtail autophagy. Our structural characterization of LpSpl and its comparison with human SPL reveals high structural conservation, thus supporting prior phylogenetic analysis. We show that LpSpl possesses S1P lyase activity that was abrogated by mutation of the catalytic site residues. L. pneumophila triggers the reduction of several sphingolipids critical for macrophage function in an LpSpl-dependent and -independent manner. LpSpl activity alone was sufficient to prevent an increase in sphingosine levels in infected host cells and to inhibit autophagy during macrophage infection. LpSpl was required for efficient infection of A/J mice, highlighting an important virulence role for this effector. Thus, we have uncovered a previously unidentified mechanism used by intracellular pathogens to inhibit autophagy, namely the disruption of host sphingolipid biosynthesis.
 +
 
 +
Legionella pneumophila S1P-lyase targets host sphingolipid metabolism and restrains autophagy.,Rolando M, Escoll P, Nora T, Botti J, Boitez V, Bedia C, Daniels C, Abraham G, Stogios PJ, Skarina T, Christophe C, Dervins-Ravault D, Cazalet C, Hilbi H, Rupasinghe TW, Tull D, McConville MJ, Ong SY, Hartland EL, Codogno P, Levade T, Naderer T, Savchenko A, Buchrieser C Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):1901-6. doi:, 10.1073/pnas.1522067113. Epub 2016 Feb 1. PMID:26831115<ref>PMID:26831115</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4w8i" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Sphinganine-1-phosphate aldolase]]
+
[[Category: Large Structures]]
-
[[Category: Cuff, M]]
+
[[Category: Legionella pneumophila str. Paris]]
-
[[Category: Daniels, C]]
+
[[Category: Cuff M]]
-
[[Category: Joachimiak, A]]
+
[[Category: Daniels C]]
-
[[Category: Leo, R Di]]
+
[[Category: Di Leo R]]
-
[[Category: Structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: Savchenko, A]]
+
[[Category: Savchenko A]]
-
[[Category: Skarina, T]]
+
[[Category: Skarina T]]
-
[[Category: Stogios, P J]]
+
[[Category: Stogios PJ]]
-
[[Category: Effector]]
+
-
[[Category: Lyase]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Psi-biology]]
+

Current revision

Crystal structure of LpSPL/Lpp2128, Legionella pneumophila sphingosine-1 phosphate lyase

PDB ID 4w8i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools