3kaq

From Proteopedia

(Difference between revisions)

Current revision

Flavodoxin from D. desulfuricans (semireduced form)

Structural highlights

3kaq is a 1 chain structure with sequence from Desulfovibrio desulfuricans ATCC 27774. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.25Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FLAW_DESDA Low-potential electron donor to a number of redox enzymes.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The crystal structures of the flavodoxin from Desulfovibrio desulfuricans ATCC 27774 have been determined and refined for both oxidized and semi-reduced forms to final crystallographic R-factors of 17.9% (0.8-0.205-nm resolution) and 19.4% (0.8-0.215-nm resolution) respectively. Native flavodoxin crystals were grown from ammonium sulfate with cell constants a = b = 9.59 nm, c=3.37nm (oxidized crystals) and they belong to space group P3(2)21. Semireduced crystals showed some changes in cell dimensions: a = b = 9.51 nm, c=3.35 nm. The three-dimensional structures are similar to other known flavodoxins and deviations are found essentially in the isoalloxazine ring environment. Conformational changes are observed between both redox states and a flip of the Gly61-Met62 peptide bond occurs upon one-electron reduction of the FMN group. These changes influence the redox potential of the oxidized/semiquinone couple. Modulation of the redox potentials is known to be related to the association constant of the FMN group to the protein. The flavodoxin from D. desulfuricans now studied has a large span between E2 (oxidized --> semiquinone) and E1 (semiquinone --> hydroquinone) redox potentials, both these values being substantially more positive within known flavodoxins. A comparison of their FMN environment was made in both oxidation states in order to correlate functional and structural differences.

Crystal structure of flavodoxin from Desulfovibrio desulfuricans ATCC 27774 in two oxidation states.,Romero A, Caldeira J, Legall J, Moura I, Moura JJ, Romao MJ Eur J Biochem. 1996 Jul 1;239(1):190-6. PMID:8706707^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Romero A, Caldeira J, Legall J, Moura I, Moura JJ, Romao MJ. Crystal structure of flavodoxin from Desulfovibrio desulfuricans ATCC 27774 in two oxidation states. Eur J Biochem. 1996 Jul 1;239(1):190-6. PMID:8706707

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kaq"

@@ Line 1: / Line 1: @@
 ==Flavodoxin from D. desulfuricans (semireduced form)==
-<StructureSection load='3kaq' size='340' side='right' caption='[[3kaq]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+<StructureSection load='3kaq' size='340' side='right'caption='[[3kaq]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3kaq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desda Desda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KAQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KAQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3kaq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans_ATCC_27774 Desulfovibrio desulfuricans ATCC 27774]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KAQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KAQ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kap|3kap]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kaq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kaq OCA], [http://pdbe.org/3kaq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kaq RCSB], [http://www.ebi.ac.uk/pdbsum/3kaq PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kaq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kaq OCA], [https://pdbe.org/3kaq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kaq RCSB], [https://www.ebi.ac.uk/pdbsum/3kaq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kaq ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/FLAW_DESDA FLAW_DESDA]] Low-potential electron donor to a number of redox enzymes.
+[https://www.uniprot.org/uniprot/FLAW_DESDA FLAW_DESDA] Low-potential electron donor to a number of redox enzymes.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ka/3kaq_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ka/3kaq_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 30: / Line 31: @@
 ==See Also==
-*[[Flavodoxin|Flavodoxin]]
+*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Desda]]
+[[Category: Desulfovibrio desulfuricans ATCC 27774]]
-[[Category: Caldeira, J]]
+[[Category: Large Structures]]
-[[Category: LeGall, J]]
+[[Category: Caldeira J]]
-[[Category: Moura, I]]
+[[Category: LeGall J]]
-[[Category: Moura, J J.G]]
+[[Category: Moura I]]
-[[Category: Romao, M J]]
+[[Category: Moura JJG]]
-[[Category: Romero, A]]
+[[Category: Romao MJ]]
-[[Category: Electron transport]]
+[[Category: Romero A]]
-[[Category: Flavodoxin]]
-[[Category: Flavoprotein]]
-[[Category: Fmn]]
-[[Category: Sulfate-reducing bacteria]]
-[[Category: Transport]]

3kaq

From Proteopedia

Current revision

Flavodoxin from D. desulfuricans (semireduced form)

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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