2kkd

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==NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin==
==NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin==
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<StructureSection load='2kkd' size='340' side='right' caption='[[2kkd]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
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<StructureSection load='2kkd' size='340' side='right'caption='[[2kkd]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2kkd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desvh Desvh]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qkz 2qkz]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KKD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KKD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2kkd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qkz 2qkz]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KKD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[8rxn|8rxn]], [[2ql0|2ql0]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rub, DVU_3184 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=882 DESVH])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kkd OCA], [https://pdbe.org/2kkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kkd RCSB], [https://www.ebi.ac.uk/pdbsum/2kkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kkd ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kkd OCA], [http://pdbe.org/2kkd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kkd RCSB], [http://www.ebi.ac.uk/pdbsum/2kkd PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RUBR_DESVH RUBR_DESVH]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Electron acceptor for cytoplasmic lactate dehydrogenase.
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[https://www.uniprot.org/uniprot/RUBR_DESVH RUBR_DESVH] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Electron acceptor for cytoplasmic lactate dehydrogenase.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/2kkd_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/2kkd_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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</div>
</div>
<div class="pdbe-citations 2kkd" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2kkd" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
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*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Desvh]]
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[[Category: Desulfovibrio vulgaris str. Hildenborough]]
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[[Category: Duarte, I C]]
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[[Category: Large Structures]]
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[[Category: Macedo, A L]]
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[[Category: Duarte IC]]
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[[Category: Markley, J L]]
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[[Category: Macedo AL]]
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[[Category: Moura, I]]
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[[Category: Markley JL]]
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[[Category: Moura, J J.G]]
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[[Category: Moura I]]
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[[Category: Nunes, S G]]
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[[Category: Moura JJG]]
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[[Category: Volkman, B F]]
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[[Category: Nunes SG]]
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[[Category: Electron transport]]
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[[Category: Volkman BF]]
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[[Category: Iron]]
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[[Category: Metal-binding]]
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[[Category: Transport]]
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Current revision

NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin

PDB ID 2kkd

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