This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bke

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:42, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==CONFORMATIONAL FLEXIBILITY REVEALED BY THE CRYSTAL STRUCTURE OF A CRENARCHAEAL RADA==
+
 
-
<StructureSection load='2bke' size='340' side='right' caption='[[2bke]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
==Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA==
 +
<StructureSection load='2bke' size='340' side='right'caption='[[2bke]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2bke]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulso Sulso]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BKE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BKE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2bke]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus_P2 Saccharolobus solfataricus P2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BKE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BKE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bke FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bke OCA], [http://pdbe.org/2bke PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bke RCSB], [http://www.ebi.ac.uk/pdbsum/2bke PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bke FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bke OCA], [https://pdbe.org/2bke PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bke RCSB], [https://www.ebi.ac.uk/pdbsum/2bke PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bke ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RADA_SULSO RADA_SULSO]] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
+
[https://www.uniprot.org/uniprot/RADA_SACS2 RADA_SACS2] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bk/2bke_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bk/2bke_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Sulso]]
+
[[Category: Large Structures]]
-
[[Category: Ariza, A]]
+
[[Category: Saccharolobus solfataricus P2]]
-
[[Category: Bond, C S]]
+
[[Category: Ariza A]]
-
[[Category: Richard, D L]]
+
[[Category: Bond CS]]
-
[[Category: White, M F]]
+
[[Category: Richard DL]]
-
[[Category: Archaea]]
+
[[Category: White MF]]
-
[[Category: Dna repair]]
+
-
[[Category: Dna-binding protei]]
+
-
[[Category: Dna-binding protein]]
+
-
[[Category: Filament]]
+
-
[[Category: Homologous recombination]]
+
-
[[Category: Rad51]]
+
-
[[Category: Rada]]
+
-
[[Category: Reca]]
+
-
[[Category: Sulfolobus solfataricus]]
+

Current revision

Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA

PDB ID 2bke

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2bke"
Personal tools