This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dou

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 9 February 2022) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
 +
==Crystal structure of methyltransferase involved in cell division from thermoplasma volcanicum gss1==
==Crystal structure of methyltransferase involved in cell division from thermoplasma volcanicum gss1==
-
<StructureSection load='3dou' size='340' side='right' caption='[[3dou]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='3dou' size='340' side='right'caption='[[3dou]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dou]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51530 Atcc 51530]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DOU FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DOU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dou OCA], [https://pdbe.org/3dou PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dou RCSB], [https://www.ebi.ac.uk/pdbsum/3dou PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dou ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dou TOPSAN]</span></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rrmJ, TV0292, TVG0303954 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=50339 ATCC 51530])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dou OCA], [http://pdbe.org/3dou PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dou RCSB], [http://www.ebi.ac.uk/pdbsum/3dou PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dou TOPSAN]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/RLME_THEVO RLME_THEVO]] Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.[HAMAP-Rule:MF_01547]
 
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/3dou_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/3dou_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 22: Line 18:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 51530]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Almo SC]]
-
[[Category: Bain, K]]
+
[[Category: Bain K]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Dickey, M]]
+
[[Category: Dickey M]]
-
[[Category: Hu, S]]
+
[[Category: Hu S]]
-
[[Category: Structural genomic]]
+
[[Category: Ozyurt S]]
-
[[Category: Ozyurt, S]]
+
[[Category: Patskovsky Y]]
-
[[Category: Patskovsky, Y]]
+
[[Category: Sauder JM]]
-
[[Category: Sauder, J M]]
+
[[Category: Wasserman S]]
-
[[Category: Wasserman, S]]
+
-
[[Category: Cell division]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Rrna processing]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of methyltransferase involved in cell division from thermoplasma volcanicum gss1

PDB ID 3dou

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools