This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1lwr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:47, 22 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Solution structure of the NCAM fibronectin type III module 2==
==Solution structure of the NCAM fibronectin type III module 2==
-
<StructureSection load='1lwr' size='340' side='right' caption='[[1lwr]], [[NMR_Ensembles_of_Models | 30 NMR models]]' scene=''>
+
<StructureSection load='1lwr' size='340' side='right'caption='[[1lwr]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1lwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LWR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1lwr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LWR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LWR FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ncam1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1lwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lwr OCA], [http://pdbe.org/1lwr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1lwr RCSB], [http://www.ebi.ac.uk/pdbsum/1lwr PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lwr OCA], [https://pdbe.org/1lwr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lwr RCSB], [https://www.ebi.ac.uk/pdbsum/1lwr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lwr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NCAM1_RAT NCAM1_RAT]] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
+
[https://www.uniprot.org/uniprot/NCAM1_RAT NCAM1_RAT] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lw/1lwr_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lw/1lwr_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 32:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Buffalo rat]]
+
[[Category: Large Structures]]
-
[[Category: Berezin, V]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Bock, E]]
+
[[Category: Berezin V]]
-
[[Category: Hinsby, A M]]
+
[[Category: Bock E]]
-
[[Category: Jensen, P H]]
+
[[Category: Hinsby AM]]
-
[[Category: Kiselyov, V V]]
+
[[Category: Jensen PH]]
-
[[Category: Kulahin, N]]
+
[[Category: Kiselyov VV]]
-
[[Category: Pedersen, N]]
+
[[Category: Kulahin N]]
-
[[Category: Poulsen, F M]]
+
[[Category: Pedersen N]]
-
[[Category: Skladchikova, G]]
+
[[Category: Poulsen FM]]
-
[[Category: Tsetlin, V]]
+
[[Category: Skladchikova G]]
-
[[Category: All beta]]
+
[[Category: Tsetlin V]]
-
[[Category: Cell adhesion]]
+
-
[[Category: Fibronectin type iii module]]
+

Current revision

Solution structure of the NCAM fibronectin type III module 2

PDB ID 1lwr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools