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3ddy

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==Structure of lumazine protein, an optical transponder of luminescent bacteria==
==Structure of lumazine protein, an optical transponder of luminescent bacteria==
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<StructureSection load='3ddy' size='340' side='right' caption='[[3ddy]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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<StructureSection load='3ddy' size='340' side='right'caption='[[3ddy]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3ddy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"photobacterium_leiognathi_subsp._leiognathi"_(boisvert_et_al._1967)_ast_and_dunlap_2004 "photobacterium leiognathi subsp. leiognathi" (boisvert et al. 1967) ast and dunlap 2004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DDY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3ddy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photobacterium_leiognathi_subsp._leiognathi Photobacterium leiognathi subsp. leiognathi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DDY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lumP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=658 "Photobacterium leiognathi subsp. leiognathi" (Boisvert et al. 1967) Ast and Dunlap 2004])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ddy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ddy OCA], [http://pdbe.org/3ddy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ddy RCSB], [http://www.ebi.ac.uk/pdbsum/3ddy PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ddy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ddy OCA], [https://pdbe.org/3ddy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ddy RCSB], [https://www.ebi.ac.uk/pdbsum/3ddy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ddy ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/LUXP_PHOLE LUXP_PHOLE]] Antenna protein that modulates the color of the bioluminescence emission of the luciferase. In the presence of LumP, luciferase emission is shifted to higher energy values (shorter wavelength).
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[https://www.uniprot.org/uniprot/LUXP_PHOLE LUXP_PHOLE] Antenna protein that modulates the color of the bioluminescence emission of the luciferase. In the presence of LumP, luciferase emission is shifted to higher energy values (shorter wavelength).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/3ddy_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/3ddy_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacher, A]]
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[[Category: Large Structures]]
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[[Category: Chatwell, L]]
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[[Category: Photobacterium leiognathi subsp. leiognathi]]
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[[Category: Fischer, M]]
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[[Category: Bacher A]]
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[[Category: Illarionov, B]]
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[[Category: Chatwell L]]
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[[Category: Illarionova, V]]
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[[Category: Fischer M]]
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[[Category: Skerra, A]]
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[[Category: Illarionov B]]
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[[Category: Lumazine protein]]
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[[Category: Illarionova V]]
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[[Category: Luminescence]]
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[[Category: Skerra A]]
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[[Category: Luminescent bacteria]]
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[[Category: Luminescent protein]]
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[[Category: Photobacterium leiognathi]]
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[[Category: Riboflavin synthase]]
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Current revision

Structure of lumazine protein, an optical transponder of luminescent bacteria

PDB ID 3ddy

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