This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2di4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:39, 22 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the FtsH protease domain==
==Crystal structure of the FtsH protease domain==
-
<StructureSection load='2di4' size='340' side='right' caption='[[2di4]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
+
<StructureSection load='2di4' size='340' side='right'caption='[[2di4]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2di4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DI4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DI4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2di4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DI4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DI4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.79&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2di4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2di4 OCA], [http://pdbe.org/2di4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2di4 RCSB], [http://www.ebi.ac.uk/pdbsum/2di4 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2di4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2di4 OCA], [https://pdbe.org/2di4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2di4 RCSB], [https://www.ebi.ac.uk/pdbsum/2di4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2di4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/FTSH_AQUAE FTSH_AQUAE]] Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity).[HAMAP-Rule:MF_01458]
+
[https://www.uniprot.org/uniprot/FTSH_AQUAE FTSH_AQUAE] Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity).[HAMAP-Rule:MF_01458]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/2di4_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/2di4_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aquifex aeolicus huber and stetter 2001]]
+
[[Category: Aquifex aeolicus]]
-
[[Category: Morikawa, K]]
+
[[Category: Large Structures]]
-
[[Category: Niwa, H]]
+
[[Category: Morikawa K]]
-
[[Category: Suno, R]]
+
[[Category: Niwa H]]
-
[[Category: Tsuchiya, D]]
+
[[Category: Suno R]]
-
[[Category: Yoshida, M]]
+
[[Category: Tsuchiya D]]
-
[[Category: Zhang, X]]
+
[[Category: Yoshida M]]
-
[[Category: Hexamer-ring]]
+
[[Category: Zhang X]]
-
[[Category: Hydrolase]]
+
-
[[Category: Metalloproteinase]]
+

Current revision

Crystal structure of the FtsH protease domain

PDB ID 2di4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2di4"
Personal tools