1d7n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:13, 9 October 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1d7n.jpg|left|200px]]
 
-
{{Structure
+
==SOLUTION STRUCTURE ANALYSIS OF THE MASTOPARAN WITH DETERGENTS==
-
|PDB= 1d7n |SIZE=350|CAPTION= <scene name='initialview01'>1d7n</scene>
+
<StructureSection load='1d7n' size='340' side='right'caption='[[1d7n]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>
+
<table><tr><td colspan='2'>[[1d7n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vespula_lewisii Vespula lewisii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D7N FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d7n OCA], [https://pdbe.org/1d7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d7n RCSB], [https://www.ebi.ac.uk/pdbsum/1d7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d7n ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1d7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d7n OCA], [http://www.ebi.ac.uk/pdbsum/1d7n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1d7n RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/MAST_VESLE MAST_VESLE] Mast cell degranulating peptide. Activates G proteins that couple to phospholipase C. May be able to switch from an in-plane to a transmembrane orientation in lipid bilayers.
-
 
+
<div style="background-color:#fffaf0;">
-
'''SOLUTION STRUCTURE ANALYSIS OF THE MASTOPARAN WITH DETERGENTS'''
+
== Publication Abstract from PubMed ==
-
 
+
-
 
+
-
==Overview==
+
Several complementary NMR approaches were used to study the interaction of mastoparan, a 14-residue peptide toxin from wasp venom, with lipid membranes. First, the 3D structure of mastoparan was determined using 1H-NMR spectroscopy in perdeuterated (SDS-d25) micelles. NOESY experiments and distance geometry calculations yielded a straight amphiphilic alpha-helix with high-order parameters, and the chemical shifts of the amide protons showed a characteristic periodicity of 3-4 residues. Secondly, solid-state 2H-NMR spectoscopy was used to describe the binding of mastoparan to lipid bilayers, composed of headgroup-deuterated dimyristoylglycerophosphocholine (DMPC-d4) and dimyristoylphosphatidylglycerol (DMPG). By correlating the deuterium quadrupole splittings of the alpha-segments and beta-segments, it was possible to differentiate the electrostatically induced structural response of the choline headgroup from dynamic effects induced by the peptide. A partial phase separation was observed, leading to a DMPG-rich phase and a DMPG-depleted phase, each containing some mastoparan. Finally, the insertion and orientation of a specifically 15N-labeled mastoparan (at position Ala10) in the bilayer environment was investigated by solid-state 15N-NMR spectroscopy, using macroscopically oriented samples. Two distinct orientational states were observed for the mastoparan helix, namely an in-plane and a trans-membrane alignment. The two populations of 90% in-plane and 10% trans-membrane helices are characterized by a mosaic spread of +/- 30 degrees and +/- 10 degrees, respectively. The biological activity of mastoparan is discussed in terms of a pore-forming model, as the peptide is known to be able to induce nonlamellar phases and facilitate a flip-flop between the monolayers.
Several complementary NMR approaches were used to study the interaction of mastoparan, a 14-residue peptide toxin from wasp venom, with lipid membranes. First, the 3D structure of mastoparan was determined using 1H-NMR spectroscopy in perdeuterated (SDS-d25) micelles. NOESY experiments and distance geometry calculations yielded a straight amphiphilic alpha-helix with high-order parameters, and the chemical shifts of the amide protons showed a characteristic periodicity of 3-4 residues. Secondly, solid-state 2H-NMR spectoscopy was used to describe the binding of mastoparan to lipid bilayers, composed of headgroup-deuterated dimyristoylglycerophosphocholine (DMPC-d4) and dimyristoylphosphatidylglycerol (DMPG). By correlating the deuterium quadrupole splittings of the alpha-segments and beta-segments, it was possible to differentiate the electrostatically induced structural response of the choline headgroup from dynamic effects induced by the peptide. A partial phase separation was observed, leading to a DMPG-rich phase and a DMPG-depleted phase, each containing some mastoparan. Finally, the insertion and orientation of a specifically 15N-labeled mastoparan (at position Ala10) in the bilayer environment was investigated by solid-state 15N-NMR spectroscopy, using macroscopically oriented samples. Two distinct orientational states were observed for the mastoparan helix, namely an in-plane and a trans-membrane alignment. The two populations of 90% in-plane and 10% trans-membrane helices are characterized by a mosaic spread of +/- 30 degrees and +/- 10 degrees, respectively. The biological activity of mastoparan is discussed in terms of a pore-forming model, as the peptide is known to be able to induce nonlamellar phases and facilitate a flip-flop between the monolayers.
-
==About this Structure==
+
Interaction of mastoparan with membranes studied by 1H-NMR spectroscopy in detergent micelles and by solid-state 2H-NMR and 15N-NMR spectroscopy in oriented lipid bilayers.,Hori Y, Demura M, Iwadate M, Ulrich AS, Niidome T, Aoyagi H, Asakura T Eur J Biochem. 2001 Jan;268(2):302-9. PMID:11168364<ref>PMID:11168364</ref>
-
1D7N is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vespula_lewisii Vespula lewisii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7N OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Interaction of mastoparan with membranes studied by 1H-NMR spectroscopy in detergent micelles and by solid-state 2H-NMR and 15N-NMR spectroscopy in oriented lipid bilayers., Hori Y, Demura M, Iwadate M, Ulrich AS, Niidome T, Aoyagi H, Asakura T, Eur J Biochem. 2001 Jan;268(2):302-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11168364 11168364]
+
</div>
-
[[Category: Single protein]]
+
<div class="pdbe-citations 1d7n" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Vespula lewisii]]
[[Category: Vespula lewisii]]
-
[[Category: Aoyagi, H.]]
+
[[Category: Aoyagi H]]
-
[[Category: Asakura, T.]]
+
[[Category: Asakura T]]
-
[[Category: Demura, M.]]
+
[[Category: Demura M]]
-
[[Category: Hori, Y.]]
+
[[Category: Hori Y]]
-
[[Category: Iwadate, M.]]
+
[[Category: Iwadate M]]
-
[[Category: Niidome, T.]]
+
[[Category: Niidome T]]
-
[[Category: immune system]]
+
-
[[Category: sodium dodecyl sulfate bound conformation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:36:15 2008''
+

Current revision

SOLUTION STRUCTURE ANALYSIS OF THE MASTOPARAN WITH DETERGENTS

PDB ID 1d7n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools