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|  | ==Pyranose 2-oxidase T169S mutant== |  | ==Pyranose 2-oxidase T169S mutant== | 
| - | <StructureSection load='3k4b' size='340' side='right' caption='[[3k4b]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3k4b' size='340' side='right'caption='[[3k4b]], [[Resolution|resolution]] 1.90Å' scene=''> | 
|  | == Structural highlights == |  | == Structural highlights == | 
| - | <table><tr><td colspan='2'>[[3k4b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Coriolus_zonatus Coriolus zonatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K4B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K4B FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3k4b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trametes_ochracea Trametes ochracea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K4B FirstGlance]. <br> | 
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | 
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1tt0|1tt0]], [[2igo|2igo]], [[2igk|2igk]], [[2igm|2igm]], [[2ign|2ign]], [[3bg6|3bg6]], [[3k4c|3k4c]]</td></tr>
 | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | 
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">p2o ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=230624 Coriolus zonatus])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k4b OCA], [https://pdbe.org/3k4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k4b RCSB], [https://www.ebi.ac.uk/pdbsum/3k4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k4b ProSAT]</span></td></tr> | 
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyranose_oxidase Pyranose oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.3.10 1.1.3.10] </span></td></tr>
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k4b OCA], [http://pdbe.org/3k4b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k4b RCSB], [http://www.ebi.ac.uk/pdbsum/3k4b PDBsum]</span></td></tr> | + |  | 
|  | </table> |  | </table> | 
|  | + | == Function == | 
|  | + | [https://www.uniprot.org/uniprot/Q7ZA32_TRAOC Q7ZA32_TRAOC]  | 
|  | == Evolutionary Conservation == |  | == Evolutionary Conservation == | 
|  | [[Image:Consurf_key_small.gif|200px|right]] |  | [[Image:Consurf_key_small.gif|200px|right]] | 
|  | Check<jmol> |  | Check<jmol> | 
|  |   <jmolCheckbox> |  |   <jmolCheckbox> | 
| - |     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/3k4b_consurf.spt"</scriptWhenChecked> | + |     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/3k4b_consurf.spt"</scriptWhenChecked> | 
| - |     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + |     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | 
|  |     <text>to colour the structure by Evolutionary Conservation</text> |  |     <text>to colour the structure by Evolutionary Conservation</text> | 
|  |   </jmolCheckbox> |  |   </jmolCheckbox> | 
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|  | __TOC__ |  | __TOC__ | 
|  | </StructureSection> |  | </StructureSection> | 
| - | [[Category: Coriolus zonatus]] | + | [[Category: Large Structures]] | 
| - | [[Category: Pyranose oxidase]] | + | [[Category: Trametes ochracea]] | 
| - | [[Category: Divne, C]] | + | [[Category: Divne C]] | 
| - | [[Category: Tan, T C]] | + | [[Category: Tan TC]] | 
| - | [[Category: Gmc oxidoreductase]]
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| - | [[Category: Homotetramer]]
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| - | [[Category: Oxidoreductase]]
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| - | [[Category: Phbh fold]]
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| - | [[Category: Rossmann fold]]
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| - | [[Category: T169s mutant]]
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|  |   Structural highlights   Function Q7ZA32_TRAOC 
   Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
 
  Publication Abstract from PubMed Pyranose 2-oxidase (P2O) catalyzes the oxidation by O(2) of d-glucose and several aldopyranoses to yield the 2-ketoaldoses and H(2)O(2). Based on crystal structures, in one rotamer conformation, the threonine hydroxyl of Thr(169) forms H-bonds to the flavin-N5/O4 locus, whereas, in a different rotamer, it may interact with either sugar or other parts of the P2O.sugar complex. Transient kinetics of wild-type (WT) and Thr(169) --> S/N/G/A replacement variants show that D-Glc binds to T169S, T169N, and WT with the same K(d) (45-47 mm), and the hydride transfer rate constants (k(red)) are similar (15.3-9.7 s(-1) at 4 degrees C). k(red) of T169G with D-glucose (0.7 s(-1), 4 degrees C) is significantly less than that of WT but not as severely affected as in T169A (k(red) of 0.03 s(-1) at 25 degrees C). Transient kinetics of WT and mutants using d-galactose show that P2O binds d-galactose with a one-step binding process, different from binding of d-glucose. In T169S, T169N, and T169G, the overall turnover with d-Gal is faster than that of WT due to an increase of k(red). In the crystal structure of T169S, Ser(169) O gamma assumes a position identical to that of O gamma 1 in Thr(169); in T169G, solvent molecules may be able to rescue H-bonding. Our data suggest that a competent reductive half-reaction requires a side chain at position 169 that is able to form an H-bond within the ES complex. During the oxidative half-reaction, all mutants failed to stabilize a C4a-hydroperoxyflavin intermediate, thus suggesting that the precise position and geometry of the Thr(169) side chain are required for intermediate stabilization.
 A conserved active-site threonine is important for both sugar and flavin oxidations of pyranose 2-oxidase.,Pitsawong W, Sucharitakul J, Prongjit M, Tan TC, Spadiut O, Haltrich D, Divne C, Chaiyen P J Biol Chem. 2010 Mar 26;285(13):9697-705. Epub 2010 Jan 20. PMID:20089849[1]
 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
  See Also  References ↑ Pitsawong W, Sucharitakul J, Prongjit M, Tan TC, Spadiut O, Haltrich D, Divne C, Chaiyen P. A conserved active-site threonine is important for both sugar and flavin oxidations of pyranose 2-oxidase. J Biol Chem. 2010 Mar 26;285(13):9697-705. Epub 2010 Jan 20. PMID:20089849 doi:10.1074/jbc.M109.073247
 
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