This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




1dat

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:56, 9 August 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dat.gif|left|200px]]
 
-
{{Structure
+
==CUBIC CRYSTAL STRUCTURE RECOMBINANT HORSE L APOFERRITIN==
-
|PDB= 1dat |SIZE=350|CAPTION= <scene name='initialview01'>1dat</scene>, resolution 2.05&Aring;
+
<StructureSection load='1dat' size='340' side='right'caption='[[1dat]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=1:Metal-Binding+Site.+Site+1+Is+Exposed+To+The+Exterior+Of+...'>1</scene>, <scene name='pdbsite=2:Metal+Site.+Site+2+Is+Located+Near+The+Inner+Surface+Of+...'>2</scene> and <scene name='pdbsite=3:Metal-Binding+Site+Cd+203+Is+Located+On+A+Two-Fold+Axis+...'>3</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>
+
<table><tr><td colspan='2'>[[1dat]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DAT FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
|GENE= CDNA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9796 Equus caballus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dat OCA], [https://pdbe.org/1dat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dat RCSB], [https://www.ebi.ac.uk/pdbsum/1dat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dat ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dat OCA], [http://www.ebi.ac.uk/pdbsum/1dat PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1dat RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/1dat_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dat ConSurf].
 +
<div style="clear:both"></div>
-
'''CUBIC CRYSTAL STRUCTURE RECOMBINANT HORSE L APOFERRITIN'''
+
==See Also==
-
 
+
*[[Ferritin 3D structures|Ferritin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1DAT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DAT OCA].
+
[[Category: Equus caballus]]
[[Category: Equus caballus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Crichton, R R.]]
+
[[Category: Crichton RR]]
-
[[Category: Estaintot, B Langlois D.]]
+
[[Category: Gallois B]]
-
[[Category: Gallois, B.]]
+
[[Category: Granier T]]
-
[[Category: Granier, T.]]
+
[[Category: Langlois D'Estaintot B]]
-
[[Category: Roland, F.]]
+
[[Category: Roland F]]
-
[[Category: apoferritin]]
+
-
[[Category: iron storage]]
+
-
[[Category: light chain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:37:59 2008''
+

Current revision

CUBIC CRYSTAL STRUCTURE RECOMBINANT HORSE L APOFERRITIN

PDB ID 1dat

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools