This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2rdx
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM== | ==Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM== | ||
| - | <StructureSection load='2rdx' size='340' side='right' caption='[[2rdx]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='2rdx' size='340' side='right'caption='[[2rdx]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2rdx]] is a 8 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2rdx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ISM Roseovarius nubinhibens ISM]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qye 2qye]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDX FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdx OCA], [https://pdbe.org/2rdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdx RCSB], [https://www.ebi.ac.uk/pdbsum/2rdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdx ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A3SNF8_ROSNI A3SNF8_ROSNI] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdx_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdx_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 20: | Line 23: | ||
==See Also== | ==See Also== | ||
*[[Mandelate racemase|Mandelate racemase]] | *[[Mandelate racemase|Mandelate racemase]] | ||
| + | *[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Almo | + | [[Category: Roseovarius nubinhibens ISM]] |
| - | [[Category: Bonanno | + | [[Category: Almo SC]] |
| - | [[Category: Burley | + | [[Category: Bonanno J]] |
| - | [[Category: Gerlt | + | [[Category: Burley SK]] |
| - | [[Category: Gheyi | + | [[Category: Gerlt JA]] |
| - | [[Category: Gilmore | + | [[Category: Gheyi T]] |
| - | [[Category: Koss | + | [[Category: Gilmore M]] |
| - | [[Category: Lau | + | [[Category: Koss J]] |
| - | [[Category: Maletic | + | [[Category: Lau C]] |
| - | + | [[Category: Maletic M]] | |
| - | [[Category: Ozyurt | + | [[Category: Ozyurt S]] |
| - | [[Category: Patskovsky | + | [[Category: Patskovsky Y]] |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Wasserman | + | [[Category: Wasserman SR]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM
| |||||||||||
Categories: Large Structures | Roseovarius nubinhibens ISM | Almo SC | Bonanno J | Burley SK | Gerlt JA | Gheyi T | Gilmore M | Koss J | Lau C | Maletic M | Ozyurt S | Patskovsky Y | Sauder JM | Wasserman SR
