This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2eo5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:43, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of 4-aminobutyrate aminotransferase from Sulfolobus tokodaii strain7==
==Crystal structure of 4-aminobutyrate aminotransferase from Sulfolobus tokodaii strain7==
-
<StructureSection load='2eo5' size='340' side='right' caption='[[2eo5]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2eo5' size='340' side='right'caption='[[2eo5]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2eo5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulto Sulto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EO5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2eo5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EO5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EO5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-aminobutyrate--2-oxoglutarate_transaminase 4-aminobutyrate--2-oxoglutarate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.19 2.6.1.19] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2eo5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eo5 OCA], [http://pdbe.org/2eo5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2eo5 RCSB], [http://www.ebi.ac.uk/pdbsum/2eo5 PDBsum], [http://www.topsan.org/Proteins/RSGI/2eo5 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eo5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eo5 OCA], [https://pdbe.org/2eo5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eo5 RCSB], [https://www.ebi.ac.uk/pdbsum/2eo5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eo5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2eo5 TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/F9VN77_SULTO F9VN77_SULTO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eo/2eo5_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eo/2eo5_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 19: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 4-aminobutyrate--2-oxoglutarate transaminase]]
+
[[Category: Large Structures]]
-
[[Category: Sulto]]
+
[[Category: Sulfurisphaera tokodaii str. 7]]
-
[[Category: Kunishima, N]]
+
[[Category: Kunishima N]]
-
[[Category: Mizutani, H]]
+
[[Category: Mizutani H]]
-
[[Category: Structural genomic]]
+
-
[[Category: Aminotransferase]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Plp enzyme]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of 4-aminobutyrate aminotransferase from Sulfolobus tokodaii strain7

PDB ID 2eo5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2eo5"
Personal tools