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| | ==Crystal Structure Analysis of Nocardia farcinica Arylamine N-acetyltransferase== | | ==Crystal Structure Analysis of Nocardia farcinica Arylamine N-acetyltransferase== |
| - | <StructureSection load='3d9w' size='340' side='right' caption='[[3d9w]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='3d9w' size='340' side='right'caption='[[3d9w]], [[Resolution|resolution]] 2.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3d9w]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_bovis_farcinicus"_gasperini_1894 "actinomyces bovis farcinicus" gasperini 1894]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D9W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D9W FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3d9w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nocardia_farcinica Nocardia farcinica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D9W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D9W FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nfa18420 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37329 "Actinomyces bovis farcinicus" Gasperini 1894])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arylamine_N-acetyltransferase Arylamine N-acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.5 2.3.1.5] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d9w OCA], [https://pdbe.org/3d9w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d9w RCSB], [https://www.ebi.ac.uk/pdbsum/3d9w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d9w ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d9w OCA], [http://pdbe.org/3d9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d9w RCSB], [http://www.ebi.ac.uk/pdbsum/3d9w PDBsum]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q5YYQ3_NOCFA Q5YYQ3_NOCFA] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| | Check<jmol> | | Check<jmol> |
| | <jmolCheckbox> | | <jmolCheckbox> |
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d9/3d9w_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d9/3d9w_consurf.spt"</scriptWhenChecked> |
| | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| | <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
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| | ==See Also== | | ==See Also== |
| - | *[[Arylamine N-acetyltransferase|Arylamine N-acetyltransferase]] | + | *[[Arylamine N-acetyltransferase 3D structures|Arylamine N-acetyltransferase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Actinomyces bovis farcinicus gasperini 1894]] | + | [[Category: Large Structures]] |
| - | [[Category: Arylamine N-acetyltransferase]] | + | [[Category: Nocardia farcinica]] |
| - | [[Category: Dupret, J M]] | + | [[Category: Dupret JM]] |
| - | [[Category: Martins, M]]
| + | [[Category: Li de la Sierra-Gallay I]] |
| - | [[Category: Pluvinage, B]]
| + | [[Category: Martins M]] |
| - | [[Category: Rodrigues-Lima, F]]
| + | [[Category: Pluvinage B]] |
| - | [[Category: Sierra-Gallay, I Li de la]] | + | [[Category: Rodrigues-Lima F]] |
| - | [[Category: Acyltransferase]] | + | |
| - | [[Category: Arylamine n-acetyltransferase]] | + | |
| - | [[Category: Nat]] | + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
Q5YYQ3_NOCFA
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Arylamine N-acetyltransferase (NAT) enzymes are found in a broad range of eukaryotes and prokaryotes. There is increasing evidence that NAT enzymes could contribute to antibiotic resistance in pathogenic bacteria such as Mycobacterium tuberculosis. Nocardia farcinica is an opportunistic human pathogen that causes pulmonary infections (nocardiosis) with clinical manifestations that resemble tuberculosis. While the genomic sequence of this prokaryote has been determined, studies of N. farcinica proteins remain almost nonexistent. In particular, N. farcinica proteins putatively involved in antibiotic resistance mechanisms have not been described structurally or functionally. Here, we have characterized a new NAT enzyme (NfNAT) from N. farcinica at the structural and functional level. NfNAT is the first N. farcinica protein for which a 3D structure is reported. We showed that this novel prokaryotic isoform is structurally and functionally related to the mycobacterial NAT enzymes. In particular, NfNAT was found to display high N-acetyltransferase activity towards several known NAT substrates including the antitubercular drug isoniazid. Interestingly, isoniazid is not used for the treatment of nocardiosis and has been shown to be poorly active against several nocardial species. On the contrary, NfNAT was found to be poorly active towards sulfamethoxazole, a sulfonamide drug considered as the treatment of choice for the treatment of nocardiosis. The functional and structural data reported in this study will help to develop our understanding of the role of NAT enzymes in nocardia and mycobacteria and may help in the rational design of NAT antagonists for a range of clinical applications.
Functional and structural characterization of the arylamine N-acetyltransferase from the opportunistic pathogen Nocardia farcinica.,Martins M, Pluvinage B, de la Sierra-Gallay IL, Barbault F, Dairou J, Dupret JM, Rodrigues-Lima F J Mol Biol. 2008 Nov 14;383(3):549-60. Epub 2008 Aug 22. PMID:18778714[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Martins M, Pluvinage B, de la Sierra-Gallay IL, Barbault F, Dairou J, Dupret JM, Rodrigues-Lima F. Functional and structural characterization of the arylamine N-acetyltransferase from the opportunistic pathogen Nocardia farcinica. J Mol Biol. 2008 Nov 14;383(3):549-60. Epub 2008 Aug 22. PMID:18778714 doi:10.1016/j.jmb.2008.08.035
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