3hsf

From Proteopedia

(Difference between revisions)

Current revision

HEAT SHOCK TRANSCRIPTION FACTOR (HSF)

Structural highlights

3hsf is a 1 chain structure with sequence from Kluyveromyces lactis. This structure supersedes the now removed PDB entry 2hsf. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HSF_KLULA DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. Also required for growth at normal temperatures.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The solution structure of the 92 residue (11 kDa) winged helix-turn-helix DNA-binding domain from the kluyveromyces lactis heat shock factor was refined using a total of 932 NOE, 35 phi, 25 chi 1, 5 chi 2 and 44 hydrogen bond restraints. The overall root-mean-square deviation for structured regions was 0.75(+/- 0.15) A. The three-helix bundle and four-stranded beta-sheet are well defined with rmsd of 0.53(+/- 0.10) A and 0.60(+/- 0.17) A, respectively. Helix H2 is underwound and bent near Pro45. The angle between helix H2 and the proposed recognition helix H3 is 96(+/- 6) degrees. Detailed comparisons are made with the X-ray structure of this protein as well as other structural studies on HSF. Overall, the results are consistent with the earlier studies. Differences are related to protein-protein interactions in the crystal and dynamics in solution. Backbone dynamics was investigated via 15N relaxation. The average R1, R2 and NOE values for residues in segments of secondary structure were 1.9(+/- 0.9) s-1, 7.8(+/- 0.9) s-1 and 0.81(+/- 0.05), respectively. The correlation time based on these data was 5.6(+/- 0.4) ns. Motional order parameters were calculated by fitting the relaxation data to one of three models. Low-order parameters were found for residues that comprise the turn between helices H2 and H3 (residues Lys49 to Phe53), and most strikingly, the 16 residue wing (residues Val68 to Arg83). These data are consistent with the lack of long-range NOEs identified in these regions. The data provide a basis for comparison with results of the protein-DNA complex. The relationship between structure and function is discussed.

Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis.,Damberger FF, Pelton JG, Liu C, Cho H, Harrison CJ, Nelson HC, Wemmer DE J Mol Biol. 1995 Dec 8;254(4):704-19. PMID:7500344^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Damberger FF, Pelton JG, Liu C, Cho H, Harrison CJ, Nelson HC, Wemmer DE. Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis. J Mol Biol. 1995 Dec 8;254(4):704-19. PMID:7500344 doi:http://dx.doi.org/10.1006/jmbi.1995.0649

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3hsf"

@@ Line 1: / Line 1: @@
 ==HEAT SHOCK TRANSCRIPTION FACTOR (HSF)==
-<StructureSection load='3hsf' size='340' side='right' caption='[[3hsf]], [[NMR_Ensembles_of_Models | 30 NMR models]]' scene=''>
+<StructureSection load='3hsf' size='340' side='right'caption='[[3hsf]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3hsf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Candida_sphaerica Candida sphaerica]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2hsf 2hsf]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HSF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HSF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3hsf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Kluyveromyces_lactis Kluyveromyces lactis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2hsf 2hsf]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HSF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HSF FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hsf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hsf OCA], [http://pdbe.org/3hsf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hsf RCSB], [http://www.ebi.ac.uk/pdbsum/3hsf PDBsum]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hsf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hsf OCA], [https://pdbe.org/3hsf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hsf RCSB], [https://www.ebi.ac.uk/pdbsum/3hsf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hsf ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/HSF_KLULA HSF_KLULA]] DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. Also required for growth at normal temperatures.
+[https://www.uniprot.org/uniprot/HSF_KLULA HSF_KLULA] DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. Also required for growth at normal temperatures.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hs/3hsf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hs/3hsf_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 26: / Line 28: @@
 </div>
 <div class="pdbe-citations 3hsf" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Heat shock factor|Heat shock factor]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Candida sphaerica]]
+[[Category: Kluyveromyces lactis]]
-[[Category: Cho, H]]
+[[Category: Large Structures]]
-[[Category: Damberger, F F]]
+[[Category: Cho H]]
-[[Category: Harrison, C J]]
+[[Category: Damberger FF]]
-[[Category: Liu, C]]
+[[Category: Harrison CJ]]
-[[Category: Nelson, H C.M]]
+[[Category: Liu C]]
-[[Category: Pelton, J G]]
+[[Category: Nelson HCM]]
-[[Category: Wemmer, D E]]
+[[Category: Pelton JG]]
-[[Category: Transcription regulation]]
+[[Category: Wemmer DE]]

3hsf

From Proteopedia

Current revision

HEAT SHOCK TRANSCRIPTION FACTOR (HSF)

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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