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| | ==BRYODIN TYPE I RIP== | | ==BRYODIN TYPE I RIP== |
| - | <StructureSection load='1bry' size='340' side='right' caption='[[1bry]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='1bry' size='340' side='right'caption='[[1bry]], [[Resolution|resolution]] 2.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1bry]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brydi Brydi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BRY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1bry]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bryonia_dioica Bryonia dioica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BRY FirstGlance]. <br> |
| - | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bry OCA], [http://pdbe.org/1bry PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bry RCSB], [http://www.ebi.ac.uk/pdbsum/1bry PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bry OCA], [https://pdbe.org/1bry PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bry RCSB], [https://www.ebi.ac.uk/pdbsum/1bry PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bry ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RIP1_BRYDI RIP1_BRYDI]] Ribosome-inactivating protein of type 1, inhibits protein synthesis in animal cells. | + | [https://www.uniprot.org/uniprot/RIP1_BRYDI RIP1_BRYDI] Ribosome-inactivating protein of type 1, inhibits protein synthesis in animal cells. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| | Check<jmol> | | Check<jmol> |
| | <jmolCheckbox> | | <jmolCheckbox> |
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/1bry_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/1bry_consurf.spt"</scriptWhenChecked> |
| | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| | <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Brydi]] | + | [[Category: Bryonia dioica]] |
| - | [[Category: RRNA N-glycosylase]] | + | [[Category: Large Structures]] |
| - | [[Category: Chang, C Y]] | + | [[Category: Chang CY]] |
| - | [[Category: Klei, H E]] | + | [[Category: Klei HE]] |
| - | [[Category: Bryodin]]
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| - | [[Category: Immunotoxin]]
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| - | [[Category: Ribosome-inactivating protein]]
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| Structural highlights
Function
RIP1_BRYDI Ribosome-inactivating protein of type 1, inhibits protein synthesis in animal cells.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Bryonia dioica (Cucurbitaceae family) produces at least two type I ribosome-inactivating proteins, bryodin 1 (BD1) and bryodin 2 (BD2). A cDNA sequence encoding BD1 was isolated from B. dioica leaf mRNA using degenerative oligonucleotides and codes for a 22 amino acid signal peptide followed by a protein of 267 residues. Expression of two recombinant BD1 (rBD1) forms in Escherichia coli yielded proteins of 267 (to the natural stop codon) and 247 amino acids (to the putative cleavage site yielding the mature protein) that had identical protein synthesis inhibition activity as compared to native BD1. The substitution of Lys for Glu at position 189 near the active site reduced the ability of rBD1 to inhibit protein synthesis by 10-fold. Toxicologic analysis showed that rBD1 was well tolerated in rodents with LD50 values of 40 mg/kg in mice and >25 mg/kg in rats. A crystal of mature rBD1 protein was used to collect X-ray diffraction data to 2.1 A resolution. The rBD1 crystal structure was solved and showed extensive homology with other type I RIPs and A chains of type II RIPs. The studies described here demonstrate that rBD1 retains full biologic activity and serve as a guide for using this potent, yet nontoxic, RIP in the construction of single-chain immunotoxin fusion proteins.
Molecular, biological, and preliminary structural analysis of recombinant bryodin 1, a ribosome-inactivating protein from the plant Bryonia dioica.,Gawlak SL, Neubauer M, Klei HE, Chang CY, Einspahr HM, Siegall CB Biochemistry. 1997 Mar 18;36(11):3095-103. PMID:9115985[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Gawlak SL, Neubauer M, Klei HE, Chang CY, Einspahr HM, Siegall CB. Molecular, biological, and preliminary structural analysis of recombinant bryodin 1, a ribosome-inactivating protein from the plant Bryonia dioica. Biochemistry. 1997 Mar 18;36(11):3095-103. PMID:9115985 doi:10.1021/bi962474+
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