This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hqf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:26, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of restriction endonuclease EcoRII N-terminal effector-binding domain in complex with cognate DNA==
==Crystal structure of restriction endonuclease EcoRII N-terminal effector-binding domain in complex with cognate DNA==
-
<StructureSection load='3hqf' size='340' side='right' caption='[[3hqf]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
+
<StructureSection load='3hqf' size='340' side='right'caption='[[3hqf]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hqf]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HQF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HQF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hqf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HQF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HQF FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1na6|1na6]], [[3hqg|3hqg]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.51&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EcoRII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hqf OCA], [https://pdbe.org/3hqf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hqf RCSB], [https://www.ebi.ac.uk/pdbsum/3hqf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hqf ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hqf OCA], [http://pdbe.org/3hqf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hqf RCSB], [http://www.ebi.ac.uk/pdbsum/3hqf PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O69414_ECOLX O69414_ECOLX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/3hqf_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/3hqf_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 30:
==See Also==
==See Also==
-
*[[Endonuclease|Endonuclease]]
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Type II site-specific deoxyribonuclease]]
+
[[Category: Large Structures]]
-
[[Category: Golovenko, D]]
+
[[Category: Golovenko D]]
-
[[Category: Grazulis, S]]
+
[[Category: Grazulis S]]
-
[[Category: Manakova, E]]
+
[[Category: Manakova E]]
-
[[Category: Siksnys, V]]
+
[[Category: Siksnys V]]
-
[[Category: Tamulaitiene, G]]
+
[[Category: Tamulaitiene G]]
-
[[Category: Dna recognition]]
+
-
[[Category: Dna-binding pseudobarrel fold]]
+
-
[[Category: Ecorii]]
+
-
[[Category: Endonuclease]]
+
-
[[Category: Hydrolase-dna complex]]
+
-
[[Category: Protein-dna complex]]
+
-
[[Category: Restriction endonuclease]]
+

Current revision

Crystal structure of restriction endonuclease EcoRII N-terminal effector-binding domain in complex with cognate DNA

PDB ID 3hqf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3hqf"
Personal tools