1lpl
From Proteopedia
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==Structural Genomics of Caenorhabditis elegans: CAP-Gly domain of F53F4.3== | ==Structural Genomics of Caenorhabditis elegans: CAP-Gly domain of F53F4.3== | ||
- | <StructureSection load='1lpl' size='340' side='right' caption='[[1lpl]], [[Resolution|resolution]] 1.77Å' scene=''> | + | <StructureSection load='1lpl' size='340' side='right'caption='[[1lpl]], [[Resolution|resolution]] 1.77Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1lpl]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1lpl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LPL FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lpl OCA], [https://pdbe.org/1lpl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lpl RCSB], [https://www.ebi.ac.uk/pdbsum/1lpl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lpl ProSAT], [https://www.topsan.org/Proteins/SECSG/1lpl TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/TBCB_CAEEL TBCB_CAEEL] Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lp/1lpl_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lp/1lpl_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lpl ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lpl ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of the CAP-Gly domain of Caenorhabditis elegans F53F4.3 protein, solved by single wavelength sulfur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove. | ||
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- | Crystal structure of the cytoskeleton-associated protein glycine-rich (CAP-Gly) domain.,Li S, Finley J, Liu ZJ, Qiu SH, Chen H, Luan CH, Carson M, Tsao J, Johnson D, Lin G, Zhao J, Thomas W, Nagy LA, Sha B, DeLucas LJ, Wang BC, Luo M J Biol Chem. 2002 Dec 13;277(50):48596-601. Epub 2002 Sep 7. PMID:12221106<ref>PMID:12221106</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1lpl" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
- | *[[CAP-Gly domain|CAP-Gly domain]] | ||
*[[CAP-Gly domain of F53F4.3|CAP-Gly domain of F53F4.3]] | *[[CAP-Gly domain of F53F4.3|CAP-Gly domain of F53F4.3]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Caenorhabditis elegans]] |
- | [[Category: Carson | + | [[Category: Large Structures]] |
- | [[Category: DeLucas | + | [[Category: Carson M]] |
- | [[Category: Finley | + | [[Category: DeLucas LJ]] |
- | [[Category: Johnson | + | [[Category: Finley J]] |
- | [[Category: Li | + | [[Category: Johnson D]] |
- | [[Category: Lin | + | [[Category: Li S]] |
- | [[Category: Liu | + | [[Category: Lin G]] |
- | [[Category: Luan | + | [[Category: Liu Z-J]] |
- | [[Category: Luo | + | [[Category: Luan CH]] |
- | [[Category: Nagy | + | [[Category: Luo M]] |
- | [[Category: Qiu | + | [[Category: Nagy LA]] |
- | + | [[Category: Qiu SH]] | |
- | [[Category: Sha | + | [[Category: Sha B]] |
- | [[Category: Thomas | + | [[Category: Thomas W]] |
- | [[Category: Tsao | + | [[Category: Tsao J]] |
- | [[Category: Wang | + | [[Category: Wang B-C]] |
- | [[Category: Zhao | + | [[Category: Zhao J]] |
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Current revision
Structural Genomics of Caenorhabditis elegans: CAP-Gly domain of F53F4.3
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Categories: Caenorhabditis elegans | Large Structures | Carson M | DeLucas LJ | Finley J | Johnson D | Li S | Lin G | Liu Z-J | Luan CH | Luo M | Nagy LA | Qiu SH | Sha B | Thomas W | Tsao J | Wang B-C | Zhao J