3ip2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of red fluorescent protein Neptune at pH 7.0==
==Crystal structure of red fluorescent protein Neptune at pH 7.0==
-
<StructureSection load='3ip2' size='340' side='right' caption='[[3ip2]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='3ip2' size='340' side='right'caption='[[3ip2]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ip2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bubble-tip_anemone Bubble-tip anemone]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IP2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IP2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ip2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entacmaea_quadricolor Entacmaea quadricolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IP2 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ip2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ip2 OCA], [http://pdbe.org/3ip2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ip2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ip2 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ip2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ip2 OCA], [https://pdbe.org/3ip2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ip2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ip2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ip2 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RFP_ENTQU RFP_ENTQU] Pigment protein.<ref>PMID:12185250</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ip/3ip2_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ip/3ip2_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 27: Line 31:
==See Also==
==See Also==
-
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
+
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bubble-tip anemone]]
+
[[Category: Entacmaea quadricolor]]
-
[[Category: Adams, S R]]
+
[[Category: Large Structures]]
-
[[Category: Aguilera, T A]]
+
[[Category: Adams SR]]
-
[[Category: Alber, T]]
+
[[Category: Aguilera TA]]
-
[[Category: Campbell, R E]]
+
[[Category: Alber T]]
-
[[Category: Lin, M Z]]
+
[[Category: Campbell RE]]
-
[[Category: Ma, W]]
+
[[Category: Lin MZ]]
-
[[Category: McKeown, M R]]
+
[[Category: Ma W]]
-
[[Category: Ng, H L]]
+
[[Category: McKeown MR]]
-
[[Category: Shaner, N C]]
+
[[Category: Ng HL]]
-
[[Category: Tsien, R Y]]
+
[[Category: Shaner NC]]
-
[[Category: Fluorescent protein]]
+
[[Category: Tsien RY]]

Current revision

Crystal structure of red fluorescent protein Neptune at pH 7.0

PDB ID 3ip2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools