3ll4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:39, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of the H13A mutant of Ykr043C in complex with fructose-1,6-bisphosphate==
==Structure of the H13A mutant of Ykr043C in complex with fructose-1,6-bisphosphate==
-
<StructureSection load='3ll4' size='340' side='right' caption='[[3ll4]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
+
<StructureSection load='3ll4' size='340' side='right'caption='[[3ll4]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ll4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LL4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LL4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ll4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LL4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LL4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2FP:1,6-FRUCTOSE+DIPHOSPHATE+(LINEAR+FORM)'>2FP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.49&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3f3k|3f3k]], [[3lg2|3lg2]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2FP:1,6-FRUCTOSE+DIPHOSPHATE+(LINEAR+FORM)'>2FP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YKR043C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ll4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ll4 OCA], [https://pdbe.org/3ll4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ll4 RCSB], [https://www.ebi.ac.uk/pdbsum/3ll4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ll4 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Fructose-bisphosphatase Fructose-bisphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.11 3.1.3.11] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ll4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ll4 OCA], [http://pdbe.org/3ll4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ll4 RCSB], [http://www.ebi.ac.uk/pdbsum/3ll4 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SHB17_YEAST SHB17_YEAST]] Sedoheptulose 1,7-bisphosphatase involved in riboneogenesis. Dephosphorylates sedoheptulose 1,7-bisphosphate (SBP), which is converted via the non-oxidative pentose phosphate pathway to ribose-5-phosphate. Has a fructose 1,6-bisphosphatase activity in vitro, but this is probably not biologically relevant, since deletion does not affect fructose 1,6-biphosphate (FBP) levels.<ref>PMID:21663798</ref>
+
[https://www.uniprot.org/uniprot/SHB17_YEAST SHB17_YEAST] Sedoheptulose 1,7-bisphosphatase involved in riboneogenesis. Dephosphorylates sedoheptulose 1,7-bisphosphate (SBP), which is converted via the non-oxidative pentose phosphate pathway to ribose-5-phosphate. Has a fructose 1,6-bisphosphatase activity in vitro, but this is probably not biologically relevant, since deletion does not affect fructose 1,6-biphosphate (FBP) levels.<ref>PMID:21663798</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ll/3ll4_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ll/3ll4_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 18824]]
+
[[Category: Large Structures]]
-
[[Category: Fructose-bisphosphatase]]
+
-
[[Category: Cui, H]]
+
-
[[Category: Dong, A]]
+
-
[[Category: Edwards, A M]]
+
-
[[Category: Joachimiak, A]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Savchenko, A]]
+
-
[[Category: Singer, A]]
+
-
[[Category: Stogios, P J]]
+
-
[[Category: Xu, X]]
+
-
[[Category: Yakunin, A F]]
+
-
[[Category: 6-bisphosphatase]]
+
-
[[Category: Fructose-1]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Metal-independent]]
+
-
[[Category: PSI, Protein structure initiative]]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Ykr043c]]
+
[[Category: Cui H]]
 +
[[Category: Dong A]]
 +
[[Category: Edwards AM]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Savchenko A]]
 +
[[Category: Singer A]]
 +
[[Category: Stogios PJ]]
 +
[[Category: Xu X]]
 +
[[Category: Yakunin AF]]

Current revision

Structure of the H13A mutant of Ykr043C in complex with fructose-1,6-bisphosphate

PDB ID 3ll4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools