2o8s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:15, 28 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==X-ray Crystal Structure of Protein AGR_C_984 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR120.==
==X-ray Crystal Structure of Protein AGR_C_984 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR120.==
-
<StructureSection load='2o8s' size='340' side='right' caption='[[2o8s]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+
<StructureSection load='2o8s' size='340' side='right'caption='[[2o8s]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2o8s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8S FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2o8s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8S FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">locus_tag="AGR_C_984" ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8s OCA], [https://pdbe.org/2o8s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8s RCSB], [https://www.ebi.ac.uk/pdbsum/2o8s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8s ProSAT], [https://www.topsan.org/Proteins/NESGC/2o8s TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8s OCA], [http://pdbe.org/2o8s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8s RCSB], [http://www.ebi.ac.uk/pdbsum/2o8s PDBsum], [http://www.topsan.org/Proteins/NESGC/2o8s TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0F4FZC1_RHIRD A0A0F4FZC1_RHIRD]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8s_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8s_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Agrt5]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Acton, T B]]
+
[[Category: Large Structures]]
-
[[Category: Baran, M C]]
+
[[Category: Acton TB]]
-
[[Category: Cunningham, K]]
+
[[Category: Baran MC]]
-
[[Category: Forouhar, F]]
+
[[Category: Cunningham K]]
-
[[Category: Hunt, J F]]
+
[[Category: Forouhar F]]
-
[[Category: Janjua, H]]
+
[[Category: Hunt JF]]
-
[[Category: Liu, J]]
+
[[Category: Janjua H]]
-
[[Category: Ma, L C]]
+
[[Category: Liu J]]
-
[[Category: Montelione, G T]]
+
[[Category: Ma L-C]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Su, M]]
+
[[Category: Su M]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Zhao, L]]
+
[[Category: Zhao L]]
-
[[Category: All alpha-helical protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

X-ray Crystal Structure of Protein AGR_C_984 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR120.

PDB ID 2o8s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools