This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2cgz
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == | + | |
| - | <StructureSection load='2cgz' size='340' side='right' caption='[[2cgz]], [[Resolution|resolution]] 2.80Å' scene=''> | + | ==Structure of Helix Pomatia agglutinin with Tn antigen== |
| + | <StructureSection load='2cgz' size='340' side='right'caption='[[2cgz]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2cgz]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2cgz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CGZ FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SER:SERINE'>SER</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cgz OCA], [https://pdbe.org/2cgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cgz RCSB], [https://www.ebi.ac.uk/pdbsum/2cgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cgz ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q2F1K8_HELPO Q2F1K8_HELPO] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/2cgz_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/2cgz_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 26: | Line 29: | ||
</div> | </div> | ||
<div class="pdbe-citations 2cgz" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 2cgz" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Agglutinin 3D structures|Agglutinin 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
| Line 31: | Line 37: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Helix pomatia]] | [[Category: Helix pomatia]] | ||
| - | [[Category: Audfray | + | [[Category: Large Structures]] |
| - | [[Category: Breton | + | [[Category: Audfray A]] |
| - | [[Category: Chazalet | + | [[Category: Breton C]] |
| - | [[Category: Gagnon | + | [[Category: Chazalet V]] |
| - | [[Category: Gautier | + | [[Category: Gagnon J]] |
| - | [[Category: Imberty | + | [[Category: Gautier C]] |
| - | [[Category: Lescar | + | [[Category: Imberty A]] |
| - | [[Category: Mitchell | + | [[Category: Lescar J]] |
| - | [[Category: Sanchez | + | [[Category: Mitchell EP]] |
| - | + | [[Category: Sanchez J-F]] | |
| - | + | ||
| - | + | ||
Current revision
Structure of Helix Pomatia agglutinin with Tn antigen
| |||||||||||
Categories: Helix pomatia | Large Structures | Audfray A | Breton C | Chazalet V | Gagnon J | Gautier C | Imberty A | Lescar J | Mitchell EP | Sanchez J-F

