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| ==STRUCTURE OF NADPH DEPENDENT THIOREDOXIN REDUCTASE== | | ==STRUCTURE OF NADPH DEPENDENT THIOREDOXIN REDUCTASE== |
- | <StructureSection load='1vdc' size='340' side='right' caption='[[1vdc]], [[Resolution|resolution]] 2.50Å' scene=''> | + | <StructureSection load='1vdc' size='340' side='right'caption='[[1vdc]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1vdc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VDC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1vdc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDC FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ATTHIREDB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdc OCA], [https://pdbe.org/1vdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdc RCSB], [https://www.ebi.ac.uk/pdbsum/1vdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdc ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdc OCA], [http://pdbe.org/1vdc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vdc RCSB], [http://www.ebi.ac.uk/pdbsum/1vdc PDBsum]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/TRXB1_ARATH TRXB1_ARATH]] Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3.<ref>PMID:11717467</ref> | + | [https://www.uniprot.org/uniprot/TRXB1_ARATH TRXB1_ARATH] Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3.<ref>PMID:11717467</ref> |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| Check<jmol> | | Check<jmol> |
| <jmolCheckbox> | | <jmolCheckbox> |
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdc_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdc_consurf.spt"</scriptWhenChecked> |
- | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
| </jmolCheckbox> | | </jmolCheckbox> |
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| ==See Also== | | ==See Also== |
- | *[[Thioredoxin Reductase|Thioredoxin Reductase]] | + | *[[Thioredoxin reductase 3D structures|Thioredoxin reductase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arath]] | + | [[Category: Arabidopsis thaliana]] |
- | [[Category: Thioredoxin-disulfide reductase]] | + | [[Category: Large Structures]] |
- | [[Category: Dai, S]] | + | [[Category: Dai S]] |
- | [[Category: Eklund, H]] | + | [[Category: Eklund H]] |
- | [[Category: Disulfide oxidoreductase]]
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- | [[Category: Flavin adenine dinuleotide]]
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- | [[Category: Hypothetical protein]]
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- | [[Category: Oxidoreductase]]
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- | [[Category: Redox-active center]]
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- | [[Category: Thioredoxin reductase]]
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| Structural highlights
Function
TRXB1_ARATH Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3.[1]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Thioredoxin exists in all organisms and is responsible for the hydrogen transfer to important enzymes for ribonucleotide reduction and the reduction of methionine sulphoxide and sulphate. Thioredoxins have also been shown to regulate enzyme activity in plants and are also involved in the regulation of transcription factors and several other regulatory activities. Thioredoxin is reduced by the flavoenzyme thioredoxin reductase using NADPH. We have now determined the first structure of a eukaryotic thioredoxin reductase, from the plant Arabidopsis thaliana, at 2.5 A resolution. The dimeric A. thaliana thioredoxin reductase is structurally similar to that of the Escherichia coli enzyme, and most differences occur in the loops. Because the plant and E. coli enzymes have the same architecture, with the same dimeric structure and the same position of the redox active disulphide bond, a similar mechanism that involves very large domain rotations is likely for the two enzymes. The subunit is divided into two domains, one that binds FAD and one that binds NADPH. The relative positions of the domains in A. thaliana thioredoxin reductase differ from those of the E. coli reductase. When the FAD domains are superimposed, the NADPH domain of A. thaliana thioredoxin reductase must be rotated by 8 degrees to superimpose on the corresponding domain of the E. coli enzyme. The domain rotation we now observe is much smaller than necessary for the thioredoxin reduction cycle.
Crystal structure of Arabidopsis thaliana NADPH dependent thioredoxin reductase at 2.5 A resolution.,Dai S, Saarinen M, Ramaswamy S, Meyer Y, Jacquot JP, Eklund H J Mol Biol. 1996 Dec 20;264(5):1044-57. PMID:9000629[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Laloi C, Rayapuram N, Chartier Y, Grienenberger JM, Bonnard G, Meyer Y. Identification and characterization of a mitochondrial thioredoxin system in plants. Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):14144-9. PMID:11717467 doi:http://dx.doi.org/10.1073/pnas.241340898
- ↑ Dai S, Saarinen M, Ramaswamy S, Meyer Y, Jacquot JP, Eklund H. Crystal structure of Arabidopsis thaliana NADPH dependent thioredoxin reductase at 2.5 A resolution. J Mol Biol. 1996 Dec 20;264(5):1044-57. PMID:9000629 doi:10.1006/jmbi.1996.0695
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