This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jjr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:51, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==V232K, N236D-TRICHOSANTHIN==
+
 
-
<StructureSection load='2jjr' size='340' side='right' caption='[[2jjr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
==V232K, N236D-trichosanthin==
 +
<StructureSection load='2jjr' size='340' side='right'caption='[[2jjr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2jjr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chinese_cucumber Chinese cucumber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JJR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JJR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2jjr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichosanthes_kirilowii Trichosanthes kirilowii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JJR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mrk|1mrk]], [[1giu|1giu]], [[1tcs|1tcs]], [[1nli|1nli]], [[2vs6|2vs6]], [[1j4g|1j4g]], [[1mrj|1mrj]], [[2jdl|2jdl]], [[1gis|1gis]], [[1qd2|1qd2]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jjr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jjr OCA], [https://pdbe.org/2jjr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jjr RCSB], [https://www.ebi.ac.uk/pdbsum/2jjr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jjr ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jjr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jjr OCA], [http://pdbe.org/2jjr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jjr RCSB], [http://www.ebi.ac.uk/pdbsum/2jjr PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RIPT_TRIKI RIPT_TRIKI]] Inactivates eukaryotic 60S ribosomal subunits.
+
[https://www.uniprot.org/uniprot/RIPT_TRIKI RIPT_TRIKI] Inactivates eukaryotic 60S ribosomal subunits.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jj/2jjr_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jj/2jjr_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 29:
</div>
</div>
<div class="pdbe-citations 2jjr" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2jjr" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chinese cucumber]]
+
[[Category: Large Structures]]
-
[[Category: RRNA N-glycosylase]]
+
[[Category: Trichosanthes kirilowii]]
-
[[Category: Au, S W]]
+
[[Category: Au SW]]
-
[[Category: Ma, M K]]
+
[[Category: Ma MK]]
-
[[Category: Mak, A N]]
+
[[Category: Mak AN]]
-
[[Category: Shaw, P C]]
+
[[Category: Shaw PC]]
-
[[Category: Too, P H]]
+
[[Category: Too PH]]
-
[[Category: Tung, C K]]
+
[[Category: Tung CK]]
-
[[Category: Wong, K B]]
+
[[Category: Wong KB]]
-
[[Category: Zhu, G]]
+
[[Category: Zhu G]]
-
[[Category: Antiviral protein]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Plant defense]]
+
-
[[Category: Protein synthesis inhibitor]]
+
-
[[Category: Tc]]
+
-
[[Category: Toxin]]
+

Current revision

V232K, N236D-trichosanthin

PDB ID 2jjr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2jjr"
Personal tools