1kwv

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==Rat mannose binding protein A complexed with a-Me-GlcNAc==
==Rat mannose binding protein A complexed with a-Me-GlcNAc==
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<StructureSection load='1kwv' size='340' side='right' caption='[[1kwv]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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<StructureSection load='1kwv' size='340' side='right'caption='[[1kwv]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1kwv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KWV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KWV FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1kwv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KWV FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1kwt|1kwt]], [[1kwu|1kwu]], [[1kww|1kww]], [[1kwx|1kwx]], [[1kwy|1kwy]], [[1kwz|1kwz]], [[1kx0|1kx0]], [[1kx1|1kx1]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MBL1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kwv OCA], [https://pdbe.org/1kwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kwv RCSB], [https://www.ebi.ac.uk/pdbsum/1kwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kwv ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kwv OCA], [http://pdbe.org/1kwv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kwv RCSB], [http://www.ebi.ac.uk/pdbsum/1kwv PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/MBL1_RAT MBL1_RAT]] Calcium-dependent lectin involved in innate immune defense. Binds mannose, fucose and N-acetylglucosamine on different microorganisms and activates the lectin complement pathway. Binds to late apoptotic cells, as well as to apoptotic blebs and to necrotic cells, but not to early apoptotic cells, facilitating their uptake by macrophages (By similarity).
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[https://www.uniprot.org/uniprot/MBL1_RAT MBL1_RAT] Calcium-dependent lectin involved in innate immune defense. Binds mannose, fucose and N-acetylglucosamine on different microorganisms and activates the lectin complement pathway. Binds to late apoptotic cells, as well as to apoptotic blebs and to necrotic cells, but not to early apoptotic cells, facilitating their uptake by macrophages (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kwv_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kwv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Buffalo rat]]
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[[Category: Large Structures]]
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[[Category: Clark, D A]]
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[[Category: Rattus norvegicus]]
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[[Category: Drickamer, K]]
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[[Category: Clark DA]]
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[[Category: Feinberg, H]]
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[[Category: Drickamer K]]
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[[Category: Kolatkar, A R]]
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[[Category: Feinberg H]]
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[[Category: Ng, K K]]
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[[Category: Kolatkar AR]]
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[[Category: Park-Snyder, S]]
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[[Category: Ng KK]]
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[[Category: Weis, W I]]
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[[Category: Park-Snyder S]]
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[[Category: C-type lectin]]
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[[Category: Weis WI]]
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[[Category: Calcium-binding protein]]
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[[Category: Immune system]]
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[[Category: Lectin]]
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[[Category: Sugar binding protein]]
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Current revision

Rat mannose binding protein A complexed with a-Me-GlcNAc

PDB ID 1kwv

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