This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2de7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==
==The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==
-
<StructureSection load='2de7' size='340' side='right' caption='[[2de7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='2de7' size='340' side='right'caption='[[2de7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2de7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14235 Atcc 14235] and [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2de7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [https://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DE7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9CA:9H-CARBAZOLE'>9CA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2de5|2de5]], [[2de6|2de6]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9CA:9H-CARBAZOLE'>9CA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de7 OCA], [http://pdbe.org/2de7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2de7 RCSB], [http://www.ebi.ac.uk/pdbsum/2de7 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2de7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de7 OCA], [https://pdbe.org/2de7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2de7 RCSB], [https://www.ebi.ac.uk/pdbsum/2de7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2de7 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q84II6_JANS3 Q84II6_JANS3]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2de7_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2de7_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 31:
==See Also==
==See Also==
-
*[[Dioxygenase|Dioxygenase]]
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 14235]]
 
[[Category: Janthinobacterium]]
[[Category: Janthinobacterium]]
-
[[Category: Ashikawa, Y]]
+
[[Category: Large Structures]]
-
[[Category: Nojiri, H]]
+
[[Category: Pseudomonas resinovorans]]
-
[[Category: 9a-dioxygenase]]
+
[[Category: Ashikawa Y]]
-
[[Category: Carbazole 1]]
+
[[Category: Nojiri H]]
-
[[Category: Electron transfer complex]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rieske non-heme iron oxygenase system]]
+
-
[[Category: Rieske-type ferredoxin]]
+
-
[[Category: Terminal oxygenase]]
+

Current revision

The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase

PDB ID 2de7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2de7"
Personal tools