This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rzg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:51, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of Human anti-HIV-1 GP120 reactive antibody 412d==
==Crystal structure of Human anti-HIV-1 GP120 reactive antibody 412d==
-
<StructureSection load='1rzg' size='340' side='right' caption='[[1rzg]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1rzg' size='340' side='right'caption='[[1rzg]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1rzg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1rzg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TYS:O-SULFO-L-TYROSINE'>TYS</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASP:ASPARTIC+ACID'>ASP</scene>, <scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=TYS:O-SULFO-L-TYROSINE'>TYS</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1rz7|1rz7]], [[1rz8|1rz8]], [[1rzf|1rzf]], [[1rzi|1rzi]], [[1rzj|1rzj]], [[1rzk|1rzk]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzg OCA], [https://pdbe.org/1rzg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rzg RCSB], [https://www.ebi.ac.uk/pdbsum/1rzg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzg ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzg OCA], [http://pdbe.org/1rzg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rzg RCSB], [http://www.ebi.ac.uk/pdbsum/1rzg PDBsum]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzg_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzg_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 29:
==See Also==
==See Also==
-
*[[Antibody|Antibody]]
+
*[[Antibody 3D structures|Antibody 3D structures]]
 +
*[[Sandbox 20009|Sandbox 20009]]
 +
*[[3D structures of human antibody|3D structures of human antibody]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Choe, H]]
+
[[Category: Large Structures]]
-
[[Category: Dimitrov, D S]]
+
[[Category: Choe H]]
-
[[Category: Farzan, M]]
+
[[Category: Dimitrov DS]]
-
[[Category: Hendrickson, W A]]
+
[[Category: Farzan M]]
-
[[Category: Huang, C C]]
+
[[Category: Hendrickson WA]]
-
[[Category: Kwong, P D]]
+
[[Category: Huang CC]]
-
[[Category: Majeed, S]]
+
[[Category: Kwong PD]]
-
[[Category: Moore, M J]]
+
[[Category: Majeed S]]
-
[[Category: Phogat, S]]
+
[[Category: Moore MJ]]
-
[[Category: Robinson, J]]
+
[[Category: Phogat S]]
-
[[Category: Sodroski, J]]
+
[[Category: Robinson J]]
-
[[Category: Venturi, M]]
+
[[Category: Sodroski J]]
-
[[Category: Wyatt, R]]
+
[[Category: Venturi M]]
-
[[Category: Zhang, M Y]]
+
[[Category: Wyatt R]]
-
[[Category: Antibody]]
+
[[Category: Zhang M-Y]]
-
[[Category: Cd4i]]
+
-
[[Category: Gp120]]
+
-
[[Category: Hiv-1]]
+
-
[[Category: Immune system]]
+
-
[[Category: Tyrosine sulfation]]
+
-
[[Category: Vh-gene usage]]
+

Current revision

Crystal structure of Human anti-HIV-1 GP120 reactive antibody 412d

PDB ID 1rzg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rzg"
Personal tools