This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zx5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:00, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==alpha-L-fucosidase complexed with inhibitor, F10==
==alpha-L-fucosidase complexed with inhibitor, F10==
-
<StructureSection load='2zx5' size='340' side='right' caption='[[2zx5]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
+
<StructureSection load='2zx5' size='340' side='right'caption='[[2zx5]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2zx5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZX5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2zx5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZX5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZX5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZX5:3-(1H-INDOL-3-YL)-N-{[(2R,3R,4R,5R,6S)-3,4,5-TRIHYDROXY-6-METHYLPIPERIDIN-2-YL]METHYL}PROPANAMIDE'>ZX5</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1hl8|1hl8]], [[2zwy|2zwy]], [[2zwz|2zwz]], [[2zx6|2zx6]], [[2zx7|2zx7]], [[2zx8|2zx8]], [[2zx9|2zx9]], [[2zxa|2zxa]], [[2zxb|2zxb]], [[2zxd|2zxd]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZX5:3-(1H-INDOL-3-YL)-N-{[(2R,3R,4R,5R,6S)-3,4,5-TRIHYDROXY-6-METHYLPIPERIDIN-2-YL]METHYL}PROPANAMIDE'>ZX5</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-L-fucosidase Alpha-L-fucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.51 3.2.1.51] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zx5 OCA], [https://pdbe.org/2zx5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zx5 RCSB], [https://www.ebi.ac.uk/pdbsum/2zx5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zx5 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zx5 OCA], [http://pdbe.org/2zx5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2zx5 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9WYE2_THEMA Q9WYE2_THEMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/2zx5_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/2zx5_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alpha-L-fucosidase]]
+
[[Category: Large Structures]]
-
[[Category: Atcc 43589]]
+
[[Category: Thermotoga maritima]]
-
[[Category: Ho, C W]]
+
[[Category: Ho C-W]]
-
[[Category: Ko, T P]]
+
[[Category: Ko T-P]]
-
[[Category: Lin, C H]]
+
[[Category: Lin C-H]]
-
[[Category: Wang, A H.J]]
+
[[Category: Wang AH-J]]
-
[[Category: Wu, H J]]
+
[[Category: Wu H-J]]
-
[[Category: Hydrolase]]
+
-
[[Category: Tim barrel]]
+

Current revision

alpha-L-fucosidase complexed with inhibitor, F10

PDB ID 2zx5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools