2yx9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of D298K copper amine oxidase from Arthrobacter globiformis==
==Crystal structure of D298K copper amine oxidase from Arthrobacter globiformis==
-
<StructureSection load='2yx9' size='340' side='right' caption='[[2yx9]], [[Resolution|resolution]] 1.68&Aring;' scene=''>
+
<StructureSection load='2yx9' size='340' side='right'caption='[[2yx9]], [[Resolution|resolution]] 1.68&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yx9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YX9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yx9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YX9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YX9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.68&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DPQ:(S)-2-AMINO-3-(4-HYDROXY-3-OXOCYCLOHEXA-1,4-DIENYL)PROPANOIC+ACID'>DPQ</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=DPQ:(S)-2-AMINO-3-(4-HYDROXY-3-OXOCYCLOHEXA-1,4-DIENYL)PROPANOIC+ACID'>DPQ</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1iu7|1iu7]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yx9 OCA], [https://pdbe.org/2yx9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yx9 RCSB], [https://www.ebi.ac.uk/pdbsum/2yx9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yx9 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxidoreductase Oxidoreductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 and 1.4.3.22 1.4.3.21 and 1.4.3.22] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yx9 OCA], [http://pdbe.org/2yx9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yx9 RCSB], [http://www.ebi.ac.uk/pdbsum/2yx9 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yx9_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yx9_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 29:
</div>
</div>
<div class="pdbe-citations 2yx9" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2yx9" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Oxidoreductase]]
+
[[Category: Arthrobacter globiformis]]
-
[[Category: Murakawa, T]]
+
[[Category: Large Structures]]
-
[[Category: Okajima, T]]
+
[[Category: Murakawa T]]
-
[[Category: Tanizawa, K]]
+
[[Category: Okajima T]]
-
[[Category: Yamaguchi, H]]
+
[[Category: Tanizawa K]]
-
[[Category: Biogenesis]]
+
[[Category: Yamaguchi H]]
-
[[Category: Cofactor]]
+
-
[[Category: Ltq]]
+
-
[[Category: Lysine tyrosylquinone]]
+
-
[[Category: Topaquinone]]
+
-
[[Category: Tpq]]
+

Current revision

Crystal structure of D298K copper amine oxidase from Arthrobacter globiformis

PDB ID 2yx9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools