This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2d4x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:46, 13 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a 26K fragment of HAP3 (FlgL)==
==Crystal structure of a 26K fragment of HAP3 (FlgL)==
-
<StructureSection load='2d4x' size='340' side='right' caption='[[2d4x]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2d4x' size='340' side='right'caption='[[2d4x]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2d4x]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2d4x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4X FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1io1|1io1]], [[1ucu|1ucu]], [[2d4y|2d4y]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4x OCA], [http://pdbe.org/2d4x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d4x RCSB], [http://www.ebi.ac.uk/pdbsum/2d4x PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4x OCA], [https://pdbe.org/2d4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4x RCSB], [https://www.ebi.ac.uk/pdbsum/2d4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4x ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FLGL_SALTY FLGL_SALTY]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4x_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4x_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 16: Line 19:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d4x ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d4x ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Flagellar protein 3D structures|Flagellar protein 3D structures]]
 +
*[[Flagellar proteins|Flagellar proteins]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Imada, K]]
+
[[Category: Large Structures]]
-
[[Category: Matsunami, H]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Nagashima, S]]
+
[[Category: Imada K]]
-
[[Category: Namba, K]]
+
[[Category: Matsunami H]]
-
[[Category: Samatey, A F]]
+
[[Category: Nagashima S]]
-
[[Category: Alpha-helical bundle]]
+
[[Category: Namba K]]
-
[[Category: Complex all-beta fold]]
+
[[Category: Samatey AF]]
-
[[Category: Multi-domain protein]]
+
-
[[Category: Structural protein]]
+

Current revision

Crystal structure of a 26K fragment of HAP3 (FlgL)

PDB ID 2d4x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools