This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2d0w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:33, 22 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of cytochrome cL from Hyphomicrobium denitrificans==
==Crystal structure of cytochrome cL from Hyphomicrobium denitrificans==
-
<StructureSection load='2d0w' size='340' side='right' caption='[[2d0w]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
+
<StructureSection load='2d0w' size='340' side='right'caption='[[2d0w]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2d0w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hyphomicrobium_denitrificans Hyphomicrobium denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D0W FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2d0w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hyphomicrobium_denitrificans Hyphomicrobium denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D0W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D0W FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.98&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2d0v|2d0v]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d0w OCA], [http://pdbe.org/2d0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d0w RCSB], [http://www.ebi.ac.uk/pdbsum/2d0w PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d0w OCA], [https://pdbe.org/2d0w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d0w RCSB], [https://www.ebi.ac.uk/pdbsum/2d0w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d0w ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q4AE24_9HYPH Q4AE24_9HYPH] Electron acceptor for MDH. Acts in methanol oxidation.[PIRNR:PIRNR000008]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d0/2d0w_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d0/2d0w_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 31:
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 34: Line 37:
</StructureSection>
</StructureSection>
[[Category: Hyphomicrobium denitrificans]]
[[Category: Hyphomicrobium denitrificans]]
-
[[Category: Hira, D]]
+
[[Category: Large Structures]]
-
[[Category: Nojiri, M]]
+
[[Category: Hira D]]
-
[[Category: Suzuki, S]]
+
[[Category: Nojiri M]]
-
[[Category: Yamaguchi, K]]
+
[[Category: Suzuki S]]
-
[[Category: Cytochrome]]
+
[[Category: Yamaguchi K]]
-
[[Category: Electron transfer]]
+
-
[[Category: Electron transport]]
+

Current revision

Crystal structure of cytochrome cL from Hyphomicrobium denitrificans

PDB ID 2d0w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d0w"
Personal tools