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| | ==Crystal Structure of StoA from Bacillus subtilis== | | ==Crystal Structure of StoA from Bacillus subtilis== |
| - | <StructureSection load='3erw' size='340' side='right' caption='[[3erw]], [[Resolution|resolution]] 2.50Å' scene=''> | + | <StructureSection load='3erw' size='340' side='right'caption='[[3erw]], [[Resolution|resolution]] 2.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3erw]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3erw]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERW FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU13840, spoIVH, stoA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3erw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3erw OCA], [http://pdbe.org/3erw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3erw RCSB], [http://www.ebi.ac.uk/pdbsum/3erw PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3erw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3erw OCA], [https://pdbe.org/3erw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3erw RCSB], [https://www.ebi.ac.uk/pdbsum/3erw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3erw ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/STOA_BACSU STOA_BACSU]] Thiol-disulfide oxidoreductase with a reductive function, involved in spore cortex synthesis. It could be involved either in breaking disulfide bonds in cortex components or in proteins that are important for cortex synthesis, or in thiol/disulfide bond interchange.<ref>PMID:15292147</ref> <ref>PMID:15342593</ref> | + | [https://www.uniprot.org/uniprot/STOA_BACSU STOA_BACSU] Thiol-disulfide oxidoreductase with a reductive function, involved in spore cortex synthesis. It could be involved either in breaking disulfide bonds in cortex components or in proteins that are important for cortex synthesis, or in thiol/disulfide bond interchange.<ref>PMID:15292147</ref> <ref>PMID:15342593</ref> |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| | Check<jmol> | | Check<jmol> |
| | <jmolCheckbox> | | <jmolCheckbox> |
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3erw_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3erw_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| | <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
| | </jmolCheckbox> | | </jmolCheckbox> |
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| | ==See Also== | | ==See Also== |
| - | *[[Protein disulfide oxidoreductase|Protein disulfide oxidoreductase]] | + | *[[Protein disulfide oxidoreductase 3D structures|Protein disulfide oxidoreductase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacillus globigii migula 1900]] | + | [[Category: Bacillus subtilis]] |
| - | [[Category: Brun, N E.Le]] | + | [[Category: Large Structures]] |
| - | [[Category: Crow, A]] | + | [[Category: Crow A]] |
| - | [[Category: Hederstedt, L]] | + | [[Category: Hederstedt L]] |
| - | [[Category: Liu, Y]] | + | [[Category: Le Brun NE]] |
| - | [[Category: Moller, M C]] | + | [[Category: Liu Y]] |
| - | [[Category: Disulfide]] | + | [[Category: Moller MC]] |
| - | [[Category: Dithiol]]
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| - | [[Category: Oxidoreductase]]
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| - | [[Category: Redox-active center]]
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| - | [[Category: Resa-like fold]]
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| - | [[Category: Sporulation]]
| + | |
| - | [[Category: Stoa]]
| + | |
| - | [[Category: Thioredoxin-like fold]]
| + | |
| Structural highlights
Function
STOA_BACSU Thiol-disulfide oxidoreductase with a reductive function, involved in spore cortex synthesis. It could be involved either in breaking disulfide bonds in cortex components or in proteins that are important for cortex synthesis, or in thiol/disulfide bond interchange.[1] [2]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Bacillus subtilis StoA is an extracytoplasmic thiol-disulfide oxidoreductase (TDOR) important for the synthesis of the endospore peptidoglycan cortex protective layer. Here we demonstrate that StoA is membrane-associated in B. subtilis and report the crystal structure of the soluble protein lacking its membrane anchor. This showed that StoA adopts a thioredoxin-like fold with N-terminal and internal additions that are characteristic of extracytoplasmic TDORs. The CXXC active site of the crystallized protein was found to be in a mixture of oxidized and reduced states, illustrating that there is little conformational variation between redox states. The midpoint reduction potential was determined as -248 mV versus normal hydrogen electrode at pH 7 consistent with StoA fulfilling a reductive role in endospore biogenesis. pK(a) values of the active site cysteines, Cys-65 and Cys-68, were determined to be 5.5 and 7.8. Although Cys-68 is buried within the structure, both cysteines were found to be accessible to cysteine-specific alkylating reagents. In vivo studies of site-directed variants of StoA revealed that the active site cysteines are functionally important, as is Glu-71, which lies close to the active site and is conserved in many reducing extracytoplasmic TDORs. The structure and biophysical properties of StoA are very similar to those of ResA, a B. subtilis extracytoplasmic TDOR involved in cytochrome c maturation, raising important general questions about how these similar but non-redundant proteins achieve specificity. A detailed comparison of the two proteins demonstrates that relatively subtle differences, largely located around the active sites of the proteins, are sufficient to confer specificity.
Structure and functional properties of Bacillus subtilis endospore biogenesis factor StoA.,Crow A, Liu Y, Moller MC, Le Brun NE, Hederstedt L J Biol Chem. 2009 Apr 10;284(15):10056-66. Epub 2009 Jan 13. PMID:19144642[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Imamura D, Kobayashi K, Sekiguchi J, Ogasawara N, Takeuchi M, Sato T. spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis. J Bacteriol. 2004 Aug;186(16):5450-9. PMID:15292147 doi:http://dx.doi.org/10.1128/JB.186.16.5450-5459.2004
- ↑ Erlendsson LS, Moller M, Hederstedt L. Bacillus subtilis StoA Is a thiol-disulfide oxidoreductase important for spore cortex synthesis. J Bacteriol. 2004 Sep;186(18):6230-8. PMID:15342593 doi:http://dx.doi.org/10.1128/JB.186.18.6230-6238.2004
- ↑ Crow A, Liu Y, Moller MC, Le Brun NE, Hederstedt L. Structure and functional properties of Bacillus subtilis endospore biogenesis factor StoA. J Biol Chem. 2009 Apr 10;284(15):10056-66. Epub 2009 Jan 13. PMID:19144642 doi:10.1074/jbc.M809566200
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