This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ixc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:38, 27 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of CbnR, a LysR family transcriptional regulator==
==Crystal structure of CbnR, a LysR family transcriptional regulator==
-
<StructureSection load='1ixc' size='340' side='right' caption='[[1ixc]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='1ixc' size='340' side='right'caption='[[1ixc]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1ixc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IXC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IXC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1ixc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IXC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IXC FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbnR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=106590 ATCC 43291])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ixc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ixc OCA], [http://pdbe.org/1ixc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ixc RCSB], [http://www.ebi.ac.uk/pdbsum/1ixc PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ixc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ixc OCA], [https://pdbe.org/1ixc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ixc RCSB], [https://www.ebi.ac.uk/pdbsum/1ixc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ixc ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9WXC7_CUPNE Q9WXC7_CUPNE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ix/1ixc_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ix/1ixc_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 26: Line 29:
</div>
</div>
<div class="pdbe-citations 1ixc" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 1ixc" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43291]]
+
[[Category: Cupriavidus necator]]
-
[[Category: Miyashita, K]]
+
[[Category: Large Structures]]
-
[[Category: Muraoka, S]]
+
[[Category: Miyashita K]]
-
[[Category: Ogawa, N]]
+
[[Category: Muraoka S]]
-
[[Category: Okumura, R]]
+
[[Category: Ogawa N]]
-
[[Category: Senda, T]]
+
[[Category: Okumura R]]
-
[[Category: Dna binding protein]]
+
[[Category: Senda T]]
-
[[Category: Long alpha helix connecting dna binding and regulatory domain]]
+

Current revision

Crystal structure of CbnR, a LysR family transcriptional regulator

PDB ID 1ixc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ixc"
Personal tools